Sequence Similarity Clusters for the Entities in PDB 1N63

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6373
95 % 3 6 6565 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 6 6541
70 % 3 6 6355
50 % 3 9 4039
40 % 3 14 2491
30 % 3 23 1350
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6374
95 % 3 6 6566 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 3 6 6542
70 % 3 6 5737
50 % 3 8 4339
40 % 3 8 4108
30 % 3 12 2617
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6419
95 % 3 6 6589 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 6 6565
70 % 3 6 6380
50 % 3 8 4340
40 % 3 9 3830
30 % 3 12 2662

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
2 1N60 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
3 1N63 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
4 1N61 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
5 1N5W 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
6 1ZXI 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
7 1FFV 2 B, E CUTL, MOLYBDOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE 47421 1.2.5.3 | Details
8 1FFU 2 B, E CUTL, MOLYBDOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE 47421 1.2.5.3 | Details