Sequence Similarity Clusters for the Entities in PDB 1N63

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6016
95 % 3 6 6219 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 6 6214
70 % 3 6 6059
50 % 3 9 3863
40 % 3 14 2383
30 % 3 23 1286
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6017
95 % 3 6 6220 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 3 6 6215
70 % 3 6 5472
50 % 3 8 4141
40 % 3 8 3919
30 % 3 12 2501
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6059
95 % 3 6 6243 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 6 6238
70 % 3 6 6085
50 % 3 8 4142
40 % 3 9 3665
30 % 3 12 2547

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
2 1N60 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
3 1N63 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
4 1N61 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
5 1N5W 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
6 1ZXI 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
7 1FFV 2 B, E CUTL, MOLYBDOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE 47421 1.2.5.3 | Details
8 1FFU 2 B, E CUTL, MOLYBDOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE 47421 1.2.5.3 | Details