Sequence Similarity Clusters for the Entities in PDB 1N63

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6351
95 % 3 6 6543 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 6 6520
70 % 3 6 6334
50 % 3 9 4030
40 % 3 14 2480
30 % 3 23 1346
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6352
95 % 3 6 6544 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 3 6 6521
70 % 3 6 5722
50 % 3 8 4324
40 % 3 8 4089
30 % 3 12 2606
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6397
95 % 3 6 6567 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 6 6544
70 % 3 6 6359
50 % 3 8 4325
40 % 3 9 3818
30 % 3 12 2650

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
2 1N60 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
3 1N63 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
4 1N61 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
5 1N5W 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
6 1RM6 3 C, F 4-hydroxybenzoyl-CoA reductase gamma subunit 59405 1.3.7.9 | Details
7 1ZXI 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
8 1T3Q 1 A, D quinoline 2-oxidoreductase small subunit 303 1.3.99.17 | Details
9 1SB3 3 C, F 4-hydroxybenzoyl-CoA reductase gamma subunit 59405 1.3.7.9 | Details
10 4ZOH 3 C Putative oxidoreductase iron-sulfur subunit 111955
11 1FFV 1 A, D CUTS, IRON-SULFUR PROTEIN OF CARBON MONOXIDE DEHYDROGENASE 47421 1.2.5.3 | Details
12 3HRD 4 D, H Nicotinate dehydrogenase small FeS subunit 1528
13 5Y6Q 1 A Aldehyde oxidase small subunit 194289
14 1FFU 1 A, D CUTS, IRON-SULFUR PROTEIN OF CARBON MONOXIDE DEHYDROGENASE 47421 1.2.5.3 | Details