Sequence Similarity Clusters for the Entities in PDB 1N63

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 5394
95 % 3 6 6071 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 6 6070
70 % 3 6 5919
50 % 3 9 3749
40 % 3 14 2356
30 % 3 23 1251
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6053
95 % 3 6 5384 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 3 6 5408
70 % 3 6 5316
50 % 3 8 3812
40 % 3 8 3669
30 % 3 12 2483
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6422
95 % 3 6 5768 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 6 5784
70 % 3 6 5678
50 % 3 8 3985
40 % 3 9 3560
30 % 3 10 2994

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.7.4 | Details
2 1N60 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.7.4 | Details
3 1N63 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.7.4 | Details
4 1N61 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.7.4 | Details
5 1N5W 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.7.4 | Details
6 1ZXI 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.7.4 | Details