Sequence Similarity Clusters for the Entities in PDB 1N63

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6313
95 % 3 6 6513 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 6 6490
70 % 3 6 6309
50 % 3 9 4023
40 % 3 14 2474
30 % 3 23 1342
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6314
95 % 3 6 6514 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 3 6 6491
70 % 3 6 5702
50 % 3 8 4318
40 % 3 8 4084
30 % 3 12 2604
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6361
95 % 3 6 6538 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 6 6515
70 % 3 6 6335
50 % 3 8 4319
40 % 3 9 3813
30 % 3 12 2646

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
2 1N60 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
3 1N63 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
4 1N61 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
5 1N5W 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
6 1ZXI 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details