Sequence Similarity Clusters for the Entities in PDB 1N63

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 5983
95 % 3 6 6186 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 6 6182
70 % 3 6 6017
50 % 3 9 3850
40 % 3 14 2368
30 % 3 23 1281
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 5984
95 % 3 6 6187 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 3 6 6183
70 % 3 6 5429
50 % 3 8 4121
40 % 3 8 3901
30 % 3 12 2491
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6026
95 % 3 6 6210 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 6 6206
70 % 3 6 6043
50 % 3 8 4122
40 % 3 9 3648
30 % 3 12 2534

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures