Sequence Similarity Clusters for the Entities in PDB 1N60

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 6028
95 % 2 6 6228 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 6 6221
70 % 2 6 6065
50 % 2 9 3863
40 % 2 14 2387
30 % 2 23 1287
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 6029
95 % 2 6 6229 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 2 6 6222
70 % 2 6 5478
50 % 2 8 4144
40 % 2 8 3925
30 % 2 12 2502
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 6071
95 % 2 6 6251 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 6 6244
70 % 2 6 6090
50 % 2 8 4145
40 % 2 9 3667
30 % 2 12 2546

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures