Sequence Similarity Clusters for the Entities in PDB 1N60

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 5360
95 % 2 6 6040 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 6 6040
70 % 2 6 5888
50 % 2 9 3721
40 % 2 13 2409
30 % 2 13 2300
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 6014
95 % 2 6 5346
90 % 2 6 5371
70 % 2 6 5283
50 % 2 8 3786
40 % 2 8 3642
30 % 2 12 2466
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 6380
95 % 2 6 5736 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 6 5752
70 % 2 6 5649
50 % 2 8 3957
40 % 2 9 3530
30 % 2 10 2971

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures