Sequence Similarity Clusters for the Entities in PDB 1N5Y

Entity #1 | Chains: T
5'-D(*AP*TP*GP*C*TP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(ATM))-3' dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
REVERSE TRANSCRIPTASE protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 6321
95 % 212 230 106
90 % 212 230 110
70 % 212 230 125
50 % 213 231 153
40 % 213 231 169
30 % 213 231 185
Entity #4 | Chains: B
REVERSE TRANSCRIPTASE protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 78 87 217
95 % 206 224 114
90 % 206 224 120
70 % 206 224 137
50 % 207 225 164
40 % 207 225 178
30 % 207 225 194
Entity #5 | Chains: L
monoclonal antibody (light chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 14207
95 % 45 49 582
90 % 56 63 365
70 % 1545 1729 2
50 % 3750 4220 1
40 % 3751 4221 1
30 % 4436 4972 1
Entity #6 | Chains: H
monoclonal antibody (heavy chain) protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 14112
95 % 5 8 8538
90 % 5 8 8466
70 % 1813 2041 1
50 % 3751 4220 1
40 % 3752 4221 1
30 % 4437 4972 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.