Sequence Similarity Clusters for the Entities in PDB 1N5Y

Entity #1 | Chains: T
5'-D(*AP*TP*GP*C*TP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(ATM))-3' dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
REVERSE TRANSCRIPTASE protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 6818
95 % 230 248 85
90 % 230 248 90
70 % 230 248 108
50 % 231 249 144
40 % 231 249 160
30 % 231 249 179
Entity #4 | Chains: B
REVERSE TRANSCRIPTASE protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 105 198
95 % 224 242 111
90 % 224 242 115
70 % 224 242 131
50 % 225 243 154
40 % 225 243 172
30 % 225 243 187
Entity #5 | Chains: L
monoclonal antibody (light chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 15142
95 % 49 53 559
90 % 60 67 369
70 % 1996 2280 1
50 % 4048 4619 1
40 % 4048 4619 1
30 % 4798 5440 1
Entity #6 | Chains: H
monoclonal antibody (heavy chain) protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 15032
95 % 5 8 9127
90 % 5 8 9045
70 % 1960 2238 2
50 % 4049 4619 1
40 % 4049 4619 1
30 % 4799 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.