Sequence Similarity Clusters for the Entities in PDB 1N5W

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6412
95 % 5 6 6605 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 5 6 6582
70 % 5 6 6395
50 % 5 9 4055
40 % 5 14 2506
30 % 5 23 1357
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6413
95 % 5 6 6606 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 5 6 6583
70 % 5 6 5779
50 % 5 8 4357
40 % 5 8 4125
30 % 5 12 2631
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6459
95 % 5 6 6632 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 5 6 6608
70 % 5 6 6422
50 % 5 8 4358
40 % 5 9 3849
30 % 5 12 2676

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
2 1N60 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
3 1N63 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
4 1N61 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
5 1N5W 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
6 1ZXI 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details