Sequence Similarity Clusters for the Entities in PDB 1N5W

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6400
95 % 5 6 6593 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 5 6 6569
70 % 5 6 6377
50 % 5 9 4046
40 % 5 14 2503
30 % 5 23 1353
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6401
95 % 5 6 6594 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 5 6 6570
70 % 5 6 5764
50 % 5 8 4349
40 % 5 8 4117
30 % 5 12 2624
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6448
95 % 5 6 6620 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 5 6 6595
70 % 5 6 6404
50 % 5 8 4350
40 % 5 9 3839
30 % 5 12 2669

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
2 1N60 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
3 1N63 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
4 1N61 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
5 1N5W 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
6 1ZXI 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
7 1FFV 3 C, F CUTM, FLAVOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE 47421 1.2.5.3 | Details
8 1FFU 3 C, F CUTM, FLAVOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE 47421 1.2.5.3 | Details