Sequence Similarity Clusters for the Entities in PDB 1N5W

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6514
95 % 5 6 6705 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 5 6 6673
70 % 5 6 6483
50 % 5 9 4109
40 % 5 14 2541
30 % 5 23 1373
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6515
95 % 5 6 6706 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 5 6 6674
70 % 5 6 5857
50 % 5 8 4404
40 % 5 8 4170
30 % 5 12 2661
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 6565
95 % 5 6 6736
90 % 5 6 6702
70 % 5 6 6510
50 % 5 8 4405
40 % 5 9 3898
30 % 5 12 2705

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
2 1N60 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
3 1N63 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
4 1N61 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
5 1N5W 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
6 1RM6 2 B, E 4-hydroxybenzoyl-CoA reductase beta subunit 59405 1.3.7.9 | Details
7 1ZXI 3 C, F Carbon monoxide dehydrogenase medium chain 40137 1.2.5.3 | Details
8 1T3Q 3 C, F quinoline 2-oxidoreductase medium subunit 303 1.3.99.17 | Details
9 1SB3 2 B, E 4-hydroxybenzoyl-CoA reductase beta subunit 59405 1.3.7.9 | Details
10 4ZOH 2 B Putative oxidoreductase FAD-binding subunit 111955
11 1FFV 3 C, F CUTM, FLAVOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE 47421 1.2.5.3 | Details
12 1FFU 3 C, F CUTM, FLAVOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE 47421 1.2.5.3 | Details