Sequence Similarity Clusters for the Entities in PDB 1N5W

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6277
95 % 5 6 6479 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 5 6 6459
70 % 5 6 6282
50 % 5 9 4004
40 % 5 14 2463
30 % 5 23 1333
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6278
95 % 5 6 6480 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 5 6 6460
70 % 5 6 5680
50 % 5 8 4300
40 % 5 8 4065
30 % 5 12 2590
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6325
95 % 5 6 6504 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 5 6 6484
70 % 5 6 6308
50 % 5 8 4301
40 % 5 9 3794
30 % 5 12 2632

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
2 1N60 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
3 1N63 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
4 1N61 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
5 1N5W 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
6 1ZXI 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details