Sequence Similarity Clusters for the Entities in PDB 1N5W

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6192
95 % 5 6 6390 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 5 6 6378
70 % 5 6 6217
50 % 5 9 3964
40 % 5 14 2437
30 % 5 23 1322
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6193
95 % 5 6 6391 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 5 6 6379
70 % 5 6 5621
50 % 5 8 4254
40 % 5 8 4030
30 % 5 12 2565
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6238
95 % 5 6 6415 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 5 6 6403
70 % 5 6 6243
50 % 5 8 4255
40 % 5 9 3767
30 % 5 12 2609

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
2 1N60 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
3 1N63 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
4 1N61 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
5 1N5W 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details
6 1ZXI 2 B, E Carbon monoxide dehydrogenase large chain 40137 1.2.5.3 | Details