Sequence Similarity Clusters for the Entities in PDB 1N5W

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6497
95 % 5 6 6690 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 5 6 6658
70 % 5 6 6470
50 % 5 9 4101
40 % 5 14 2539
30 % 5 23 1373
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6498
95 % 5 6 6691 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 5 6 6659
70 % 5 6 5843
50 % 5 8 4396
40 % 5 8 4157
30 % 5 12 2661
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 6546
95 % 5 6 6718
90 % 5 6 6684
70 % 5 6 6495
50 % 5 8 4397
40 % 5 9 3887
30 % 5 12 2705

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
2 1N60 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
3 1N63 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
4 1N61 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
5 1N5W 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
6 1ZXI 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details