Sequence Similarity Clusters for the Entities in PDB 1N5W

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6188
95 % 5 6 6383 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 5 6 6370
70 % 5 6 6212
50 % 5 9 3959
40 % 5 14 2437
30 % 5 23 1317
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6189
95 % 5 6 6384 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 5 6 6371
70 % 5 6 5617
50 % 5 8 4251
40 % 5 8 4027
30 % 5 12 2563
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6233
95 % 5 6 6408 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 5 6 6395
70 % 5 6 6238
50 % 5 8 4252
40 % 5 9 3761
30 % 5 12 2607

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
2 1N60 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
3 1N63 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
4 1N61 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
5 1N5W 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
6 1RM6 3 C, F 4-hydroxybenzoyl-CoA reductase gamma subunit 59405 1.3.7.9 | Details
7 3NVW 1 A, J Xanthine dehydrogenase/oxidase Iron-Sulfur Binding Domain 9913 1.17.1.4 | Details 1.17.3.2 | Details
8 1ZXI 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
9 3NVZ 1 A, J Xanthine dehydrogenase/oxidase Iron-Sulfur Binding Domain 9913 1.17.1.4 | Details 1.17.3.2 | Details
10 1T3Q 1 A, D quinoline 2-oxidoreductase small subunit 303 1.3.99.17 | Details
11 3NRZ 1 A, J Xanthine dehydrogenase/oxidase iron-sulfur binding domain 9913 1.17.1.4 | Details 1.17.3.2 | Details
12 3NVV 1 A, J Xanthine dehydrogenase/oxidase Iron-Sulfur Binding Domain 9913 1.17.1.4 | Details 1.17.3.2 | Details
13 3NVY 1 A, J Xanthine dehydrogenase/oxidase Iron-Sulfur Binding Domain 9913 1.17.1.4 | Details 1.17.3.2 | Details
14 1SB3 3 C, F 4-hydroxybenzoyl-CoA reductase gamma subunit 59405 1.3.7.9 | Details
15 4ZOH 3 C Putative oxidoreductase iron-sulfur subunit 111955
16 3ETR 1 A, L Xanthine dehydrogenase/oxidase UNP residues 2-165 9913
17 3SR6 1 A, J Xanthine dehydrogenase/oxidase Iron-Sulfur Binding Domain, UNP residues 2-165 9913 1.17.1.4 | Details 1.17.3.2 | Details
18 1FFV 1 A, D CUTS, IRON-SULFUR PROTEIN OF CARBON MONOXIDE DEHYDROGENASE 47421 1.2.5.3 | Details
19 3HRD 4 D, H Nicotinate dehydrogenase small FeS subunit 1528
20 5Y6Q 1 A Aldehyde oxidase small subunit 194289
21 1FFU 1 A, D CUTS, IRON-SULFUR PROTEIN OF CARBON MONOXIDE DEHYDROGENASE 47421 1.2.5.3 | Details
22 3EUB 1 2, A, J, S Xanthine dehydrogenase/oxidase 2Fe-2S ferredoxin-type domain, residues 1-165 9913 1.17.1.4 | Details 1.17.3.2 | Details
23 3NS1 1 A, J Xanthine dehydrogenase/oxidase iron-sulfur binding domain 9913 1.17.1.4 | Details 1.17.3.2 | Details