Sequence Similarity Clusters for the Entities in PDB 1N5W

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6219
95 % 5 6 6425 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 5 6 6409
70 % 5 6 6240
50 % 5 9 3977
40 % 5 14 2448
30 % 5 23 1325
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6220
95 % 5 6 6426 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 5 6 6410
70 % 5 6 5640
50 % 5 8 4268
40 % 5 8 4044
30 % 5 12 2575
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6265
95 % 5 6 6450 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 5 6 6434
70 % 5 6 6266
50 % 5 8 4269
40 % 5 9 3777
30 % 5 12 2619

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1N62 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
2 1N60 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
3 1N63 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
4 1N61 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
5 1N5W 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details
6 1ZXI 1 A, D Carbon monoxide dehydrogenase small chain 40137 1.2.5.3 | Details