Sequence Similarity Clusters for the Entities in PDB 1N5W

Entity #1 | Chains: A,D
Carbon monoxide dehydrogenase small chain protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 5123
95 % 5 6 5801 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 5 6 5795
70 % 5 6 5671
50 % 5 9 3596
40 % 5 13 2321
30 % 5 13 2227
Entity #2 | Chains: B,E
Carbon monoxide dehydrogenase large chain protein, length: 809 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 5783
95 % 5 6 5114 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 5 6 5131
70 % 5 6 5073
50 % 5 8 3661
40 % 5 8 3527
30 % 5 12 2385
Entity #3 | Chains: C,F
Carbon monoxide dehydrogenase medium chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6134
95 % 5 6 5499 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 5 6 5510
70 % 5 6 5431
50 % 5 8 3835
40 % 5 9 3420
30 % 5 10 2871

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.