Sequence Similarity Clusters for the Entities in PDB 1N5A

Entity #1 | Chains: A,D,G,J
H-2 class I histocompatibility antigen, D-B alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 64 197
95 % 63 68 255 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 65 70 265
70 % 702 732 6
50 % 704 737 7
40 % 749 788 10
30 % 860 919 15
Entity #2 | Chains: B,E,H,K
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 129 136 98
95 % 216 234 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 216 234 65
70 % 879 936 4
50 % 896 958 3
40 % 896 958 7
30 % 896 958 12
Entity #3 | Chains: C,F,I,L
nonameric peptide, gp33 derived from lymphocytic choriomeningitis virus protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures