Sequence Similarity Clusters for the Entities in PDB 1N5A

Entity #1 | Chains: A,D,G,J
H-2 class I histocompatibility antigen, D-B alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 46 250
95 % 47 50 334
90 % 49 52 349
70 % 632 657 7
50 % 634 662 7
40 % 676 710 11
30 % 773 827 15
Entity #2 | Chains: B,E,H,K
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 125 131 95
95 % 196 213 66
90 % 196 213 70
70 % 805 857 5
50 % 820 877 4
40 % 820 877 9
30 % 820 877 14
Entity #3 | Chains: C,F,I,L
nonameric peptide, gp33 derived from lymphocytic choriomeningitis virus protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.