Sequence Similarity Clusters for the Entities in PDB 1N5A

Entity #1 | Chains: A,D,G,J
H-2 class I histocompatibility antigen, D-B alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 61 195
95 % 60 65 252 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 62 67 258
70 % 686 716 6
50 % 688 721 6
40 % 733 772 10
30 % 837 896 15
Entity #2 | Chains: B,E,H,K
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 128 135 96
95 % 210 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 210 228 65
70 % 856 912 4
50 % 873 934 3
40 % 873 934 7
30 % 873 934 12
Entity #3 | Chains: C,F,I,L
nonameric peptide, gp33 derived from lymphocytic choriomeningitis virus protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.