Sequence Similarity Clusters for the Entities in PDB 1N5A

Entity #1 | Chains: A,D,G,J
H-2 class I histocompatibility antigen, D-B alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 55 207
95 % 56 59 269
90 % 58 61 276
70 % 666 692 6
50 % 668 697 6
40 % 713 748 10
30 % 813 868 15
Entity #2 | Chains: B,E,H,K
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 127 133 95
95 % 200 217 64
90 % 200 217 68
70 % 833 885 4
50 % 850 907 3
40 % 850 907 9
30 % 850 907 14
Entity #3 | Chains: C,F,I,L
nonameric peptide, gp33 derived from lymphocytic choriomeningitis virus protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.