Sequence Similarity Clusters for the Entities in PDB 1N5A

Entity #1 | Chains: A,D,G,J
H-2 class I histocompatibility antigen, D-B alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 55 205
95 % 56 59 265 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 58 61 271
70 % 655 681 7
50 % 657 686 6
40 % 701 736 10
30 % 798 853 15
Entity #2 | Chains: B,E,H,K
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 127 133 95
95 % 198 215 64 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 198 215 68
70 % 820 872 4
50 % 837 894 4
40 % 837 894 8
30 % 837 894 14
Entity #3 | Chains: C,F,I,L
nonameric peptide, gp33 derived from lymphocytic choriomeningitis virus protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.