Sequence Similarity Clusters for the Entities in PDB 1N59

Entity #1 | Chains: A,C
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 53 453
95 % 60 65 425 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 64 70 391
70 % 694 740 6
50 % 705 754 7
40 % 749 806 9
30 % 850 930 12
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 189 81
95 % 210 234 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 210 234 66
70 % 866 944 4
50 % 882 966 3
40 % 882 966 6
30 % 882 966 9
Entity #3 | Chains: P,Q
nonameric peptide, gp33 derived from lymphocytic choriomeningitis virus protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures