Sequence Similarity Clusters for the Entities in PDB 1N59

Entity #1 | Chains: A,C
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 49 409
95 % 60 65 364 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 64 70 366
70 % 673 716 6
50 % 675 721 6
40 % 719 772 10
30 % 820 896 15
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 123 135 94
95 % 204 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 204 228 65
70 % 839 912 4
50 % 855 934 3
40 % 855 934 7
30 % 855 934 12
Entity #3 | Chains: P,Q
nonameric peptide, gp33 derived from lymphocytic choriomeningitis virus protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.