Sequence Similarity Clusters for the Entities in PDB 1N54

Entity #1 | Chains: A
80 kDa nuclear cap binding protein protein, length: 790 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 16007
95 % 5 6 7984 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 5 6 7940
70 % 5 6 7649
50 % 5 6 7047
40 % 5 6 6556
30 % 5 6 5851
Entity #2 | Chains: B
20 kDa nuclear cap binding protein protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 9226
95 % 6 7 9387 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.9
PDBFlex
90 % 6 7 9285
70 % 6 7 8855
50 % 6 7 8002
40 % 6 7 7348
30 % 6 7 6488

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.