Sequence Similarity Clusters for the Entities in PDB 1N52

Entity #1 | Chains: A
80 kDa nuclear cap binding protein protein, length: 790 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 7695
95 % 4 8 3045
90 % 4 8 3090
70 % 4 8 3062
50 % 4 8 3008
40 % 4 8 2959
30 % 4 8 2771
Entity #2 | Chains: B
20 kDa nuclear cap binding protein protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 2591
95 % 3 9 3237 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.9
PDBFlex
90 % 3 9 3282
70 % 3 9 3244
50 % 3 9 3157
40 % 3 9 3072
30 % 3 9 2881

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures