Sequence Similarity Clusters for the Entities in PDB 1N52

Entity #1 | Chains: A
80 kDa nuclear cap binding protein protein, length: 790 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 7592
95 % 4 8 3002
90 % 4 8 3051
70 % 4 8 3021
50 % 4 8 2970
40 % 4 8 2931
30 % 4 8 2744
Entity #2 | Chains: B
20 kDa nuclear cap binding protein protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 2543
95 % 3 9 3187 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.9
PDBFlex
90 % 3 9 3233
70 % 3 9 3195
50 % 3 9 3117
40 % 3 9 3039
30 % 3 9 2851

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.