Sequence Similarity Clusters for the Entities in PDB 1N4X

Entity #1 | Chains: L,M
immunoglobulin kappa chain variable region protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46336
95 % 1 1 34699
90 % 3 13 3385
70 % 3 20 1873
50 % 65 308 21
40 % 200 929 5
30 % 223 1056 7
Entity #2 | Chains: H,I
immunoglobulin heavy chain variable region protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45972
95 % 1 1 34414 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 32894
70 % 1 4 12153
50 % 128 576 7
40 % 201 929 5
30 % 224 1056 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.