Sequence Similarity Clusters for the Entities in PDB 1N4X

Entity #1 | Chains: L,M
immunoglobulin kappa chain variable region protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47247
95 % 1 1 35336
90 % 3 13 3468
70 % 3 20 1931
50 % 65 309 23
40 % 203 945 5
30 % 226 1074 7
Entity #2 | Chains: H,I
immunoglobulin heavy chain variable region protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46876
95 % 1 1 35043 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 33463
70 % 1 4 12378
50 % 131 591 7
40 % 204 945 5
30 % 227 1074 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures