Sequence Similarity Clusters for the Entities in PDB 1N4X

Entity #1 | Chains: L,M
immunoglobulin kappa chain variable region protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47866
95 % 1 1 35780
90 % 3 13 3521
70 % 3 20 1966
50 % 65 312 23
40 % 204 956 5
30 % 227 1085 7
Entity #2 | Chains: H,I
immunoglobulin heavy chain variable region protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47492
95 % 1 1 35484 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 33871
70 % 1 4 12562
50 % 132 599 6
40 % 205 956 5
30 % 228 1085 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures