Sequence Similarity Clusters for the Entities in PDB 1N4X

Entity #1 | Chains: L,M
immunoglobulin kappa chain variable region protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36785
95 % 1 1 31322 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 3 12 3815
70 % 45 215 66
50 % 66 319 21
40 % 74 363 27
30 % 879 7269 1
Entity #2 | Chains: H,I
immunoglobulin heavy chain variable region protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36784
95 % 1 1 31321 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 30007
70 % 1 4 11769
50 % 135 613 6
40 % 713 5834 1
30 % 880 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures