Sequence Similarity Clusters for the Entities in PDB 1N4S

Entity #1 | Chains: A,C,E,G,I,K
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 34 361
95 % 31 42 420 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 43 56 374
70 % 43 56 409
50 % 43 56 488
40 % 43 56 526
30 % 43 56 526
Entity #2 | Chains: B,D,F,H,J,L
Geranylgeranyl transferase type-1 subunit beta protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 10 607
95 % 3 10 820 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 3 10 853
70 % 3 10 889
50 % 3 10 938
40 % 3 10 964
30 % 3 10 938
Entity #3 | Chains: M,N,O,P,Q,R
Fusion protein consisting of transforming protein p21b and Ras related protein Rap-2b protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.