Sequence Similarity Clusters for the Entities in PDB 1N4R

Entity #1 | Chains: A,C,E,G,I,K
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 34 389
95 % 38 42 469 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 51 56 392
70 % 51 56 431
50 % 51 56 506
40 % 51 56 548
30 % 51 56 543
Entity #2 | Chains: B,D,F,H,J,L
Geranylgeranyl transferase type-1 subunit beta protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 626
95 % 9 10 855 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 9 10 887
70 % 9 10 917
50 % 9 10 955
40 % 9 10 985
30 % 9 10 968
Entity #3 | Chains: M,N,O,P,Q,R
Fusion protein consisting of transforming protein p21b and Ras related protein Rap-2b protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures