Sequence Similarity Clusters for the Entities in PDB 1N4Q

Entity #1 | Chains: A,C,E,G,I,K
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 34 388
95 % 24 42 467 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 36 56 389
70 % 36 56 427
50 % 36 56 502
40 % 36 56 544
30 % 36 56 540
Entity #2 | Chains: B,D,F,H,J,L
Geranylgeranyl transferase type-1 subunit beta protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 622
95 % 1 10 844 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 1 10 876
70 % 1 10 907
50 % 1 10 953
40 % 1 10 980
30 % 1 10 960
Entity #3 | Chains: M,N,O,P,Q,R
Fusion protein consisting of transforming protein p21b and Ras related protein Rap-2b protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures