Sequence Similarity Clusters for the Entities in PDB 1N4Q

Entity #1 | Chains: A,C,E,G,I,K
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 34 396
95 % 24 42 481 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 36 56 412
70 % 36 56 449
50 % 36 56 512
40 % 36 56 551
30 % 36 56 547
Entity #2 | Chains: B,D,F,H,J,L
Geranylgeranyl transferase type-1 subunit beta protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 633
95 % 1 10 864 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 1 10 898
70 % 1 10 928
50 % 1 10 963
40 % 1 10 996
30 % 1 10 980
Entity #3 | Chains: M,N,O,P,Q,R
Fusion protein consisting of transforming protein p21b and Ras related protein Rap-2b protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures