Sequence Similarity Clusters for the Entities in PDB 1N4P

Entity #1 | Chains: A,C,E,G,I,K
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 34 397
95 % 36 42 483 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 48 56 413
70 % 48 56 451
50 % 48 56 513
40 % 48 56 552
30 % 48 56 548
Entity #2 | Chains: B,D,F,H,J,L
Geranylgeranyl transferase type-1 subunit beta protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 634
95 % 7 10 865 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 7 10 899
70 % 7 10 929
50 % 7 10 964
40 % 7 10 997
30 % 7 10 981
Entity #3 | Chains: M,N
Fusion protein consisting of transforming protein p21b and Ras related protein Rap-2b protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures