Sequence Similarity Clusters for the Entities in PDB 1N4M

Entity #1 | Chains: A,B
Retinoblastoma Pocket protein, length: 345 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35705
95 % 2 4 10534 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.2
PDBFlex
90 % 2 4 10387
70 % 3 5 7513
50 % 3 5 6914
40 % 3 5 6392
30 % 4 8 4338
Entity #2 | Chains: C,D,E
Transcription factor E2F2 protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures