Sequence Similarity Clusters for the Entities in PDB 1N3N

Entity #1 | Chains: A,C,E,G
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 63 200
95 % 64 67 253 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 66 69 265
70 % 702 727 6
50 % 704 732 6
40 % 750 783 10
30 % 862 909 15
Entity #2 | Chains: B,D,F,H
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 131 135 97
95 % 218 230 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 218 230 65
70 % 878 924 4
50 % 896 946 3
40 % 896 946 7
30 % 896 946 12
Entity #3 | Chains: I,J,K,L
mycobacterial hsp60 decameric epitope protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures