Sequence Similarity Clusters for the Entities in PDB 1N3N

Entity #1 | Chains: A,C,E,G
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 61 195
95 % 62 65 252 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 64 67 258
70 % 691 716 6
50 % 693 721 6
40 % 739 772 10
30 % 849 896 15
Entity #2 | Chains: B,D,F,H
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 131 135 96
95 % 216 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 216 228 65
70 % 867 912 4
50 % 885 934 3
40 % 885 934 7
30 % 885 934 12
Entity #3 | Chains: I,J,K,L
mycobacterial hsp60 decameric epitope protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.