Sequence Similarity Clusters for the Entities in PDB 1N3N

Entity #1 | Chains: A,C,E,G
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 64 197
95 % 65 68 255 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 67 70 265
70 % 707 732 6
50 % 709 737 7
40 % 755 788 10
30 % 872 919 15
Entity #2 | Chains: B,D,F,H
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 132 136 98
95 % 222 234 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 222 234 65
70 % 890 936 4
50 % 908 958 3
40 % 908 958 7
30 % 908 958 12
Entity #3 | Chains: I,J,K,L
mycobacterial hsp60 decameric epitope protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures