Sequence Similarity Clusters for the Entities in PDB 1N3E

Entity #1 | Chains: C,E,I,K
5'-D(*CP*GP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*AP*C)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,F,J,L
5'-D(P*GP*AP*CP*GP*TP*TP*TP*TP*CP*G)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,G,H
DNA endonuclease I-CreI protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 2113
95 % 23 28 926 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.8
PDBFlex
90 % 26 31 878
70 % 26 31 914
50 % 26 31 962
40 % 26 31 984
30 % 33 40 695

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.