Sequence Similarity Clusters for the Entities in PDB 1N38

Entity #1 | Chains: B
5'-R(P*GP*C)-3' rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-R(*AP*UP*UP*AP*GP*C)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Minor core protein lambda 3 protein, length: 1267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 10831
95 % 4 7 9958 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 4 7 9847
70 % 4 7 9362
50 % 4 7 8466
40 % 4 7 7760
30 % 4 7 6860

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.