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An Information Portal to 111749 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position
Sequence Clustering and Redundancy Reduction Results
1N36
Sequence Clusters for the Sequence Entities in PDB 1N36
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 217 36
95% 187 218 51
90% 187 218 55
70% 187 218 66
50% 222 306 31
40% 222 306 42
30% 242 368 40
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 219 34
95% 187 219 47
90% 187 219 51
70% 187 219 61
50% 216 300 42
40% 238 369 30
30% 238 370 38
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 182 46
95% 187 226 39
90% 187 226 43
70% 216 311 22
50% 216 312 30
40% 216 312 41
30% 216 312 57
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 220 32
95% 187 220 45
90% 187 220 49
70% 187 220 59
50% 219 305 39
40% 219 305 50
30% 239 369 44
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 218 35
95% 187 218 52
90% 187 218 56
70% 187 219 64
50% 187 219 92
40% 187 219 114
30% 187 219 128
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 222 29
95% 191 227 36
90% 191 227 40
70% 191 227 52
50% 223 313 29
40% 223 314 39
30% 223 314 54
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 214 37
95% 187 219 49
90% 187 219 53
70% 187 219 63
50% 187 219 91
40% 187 220 113
30% 219 303 70
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 80 226
95% 184 213 56
90% 186 217 58
70% 186 217 69
50% 186 217 94
40% 186 217 116
30% 186 217 130
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 49 532
95% 170 194 64
90% 170 194 67
70% 170 194 79
50% 170 194 113
40% 170 194 131
30% 170 194 150
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 222 28
95% 188 222 41
90% 188 222 46
70% 188 222 56
50% 217 303 38
40% 217 303 48
30% 217 303 67
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 219 30
95% 187 220 42
90% 187 220 47
70% 187 220 57
50% 216 299 41
40% 216 300 51
30% 216 300 69
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 169 49
95% 187 218 50
90% 187 218 54
70% 187 218 65
50% 187 218 93
40% 187 218 115
30% 187 218 129
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 209 40
95% 186 209 59
90% 186 209 62
70% 186 209 73
50% 186 209 100
40% 186 209 123
30% 186 209 135
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 193 45
95% 170 193 65
90% 170 193 68
70% 170 193 80
50% 184 237 77
40% 184 237 102
30% 184 237 121
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 185 212 38
95% 187 220 43
90% 187 220 48
70% 187 220 58
50% 216 300 40
40% 216 301 49
30% 216 301 68
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 219 33
95% 187 219 46
90% 187 219 50
70% 187 219 60
50% 217 304 37
40% 217 304 47
30% 217 306 63
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 224 25
95% 195 230 24
90% 195 230 29
70% 195 230 41
50% 195 230 83
40% 195 230 108
30% 212 269 80
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 223 27
95% 188 224 40
90% 188 224 44
70% 188 224 54
50% 209 267 51
40% 209 268 64
30% 209 268 83
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 219 31
95% 186 219 44
90% 188 223 45
70% 188 223 55
50% 219 306 35
40% 220 308 43
30% 241 373 37
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 89 181
95% 187 219 48
90% 187 219 52
70% 187 219 62
50% 216 300 43
40% 216 300 52
30% 236 364 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.