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Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position
Sequence Clustering and Redundancy Reduction Results
1N36
Sequence Clusters for the Sequence Entities in PDB 1N36
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 204 25
95% 174 205 45
90% 174 205 47
70% 174 205 57
50% 208 290 35
40% 208 290 45
30% 228 342 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 206 23
95% 174 206 41
90% 174 206 43
70% 174 206 52
50% 202 284 41
40% 224 343 34
30% 224 344 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 172 33
95% 174 213 32
90% 174 213 35
70% 202 295 24
50% 202 296 34
40% 202 296 44
30% 202 296 67
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 207 20
95% 174 207 39
90% 174 207 41
70% 174 207 50
50% 205 289 39
40% 205 289 49
30% 225 343 48
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 205 24
95% 174 205 46
90% 174 205 48
70% 174 206 55
50% 174 206 85
40% 174 206 110
30% 174 206 129
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 209 18
95% 178 214 30
90% 178 214 33
70% 178 214 43
50% 209 297 33
40% 209 298 43
30% 209 298 65
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 201 29
95% 174 206 43
90% 174 206 45
70% 174 206 54
50% 174 206 84
40% 174 207 109
30% 205 287 74
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 80 223
95% 171 200 47
90% 173 204 49
70% 173 204 58
50% 173 204 87
40% 173 204 112
30% 173 204 131
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 49 515
95% 156 180 55
90% 156 180 57
70% 156 180 72
50% 156 180 119
40% 156 180 143
30% 156 180 159
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 209 17
95% 175 209 34
90% 175 209 38
70% 175 209 47
50% 203 287 38
40% 203 287 48
30% 203 287 71
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 206 21
95% 174 207 36
90% 174 207 39
70% 174 207 48
50% 202 283 43
40% 202 284 51
30% 202 284 73
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 156 52
95% 174 205 44
90% 174 205 46
70% 174 205 56
50% 174 205 86
40% 174 205 111
30% 174 205 130
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 196 32
95% 173 196 51
90% 173 196 53
70% 173 196 64
50% 173 196 97
40% 173 196 120
30% 173 196 143
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 179 36
95% 156 179 56
90% 156 179 59
70% 156 179 73
50% 169 220 77
40% 169 220 101
30% 169 220 120
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 199 30
95% 174 207 37
90% 174 207 40
70% 174 207 49
50% 202 284 40
40% 202 285 50
30% 202 285 72
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 206 22
95% 174 206 40
90% 174 206 42
70% 174 206 51
50% 203 288 37
40% 203 288 47
30% 203 290 69
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 211 15
95% 182 217 28
90% 182 217 31
70% 182 217 41
50% 182 217 78
40% 182 217 102
30% 199 256 85
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 210 16
95% 175 211 33
90% 175 211 36
70% 175 211 45
50% 196 254 52
40% 196 255 67
30% 196 255 88
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 206 19
95% 173 206 38
90% 175 210 37
70% 175 210 46
50% 205 290 36
40% 206 292 46
30% 227 347 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 90 160
95% 174 206 42
90% 174 206 44
70% 174 206 53
50% 202 284 42
40% 202 284 52
30% 222 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.