1N36

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position


Sequence Similarity Clusters for the Entities in PDB 1N36

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 222 267 40
95 % 223 268 54
90 % 223 268 58
70 % 223 268 69
50 % 265 402 26
40 % 265 402 37
30 % 296 502 32
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 269 37
95 % 223 269 50
90 % 223 269 54
70 % 223 269 64
50 % 259 395 34
40 % 292 501 19
30 % 292 501 33
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 164 217 50
95 % 223 276 40
90 % 223 276 44
70 % 259 406 22
50 % 259 412 25
40 % 259 412 35
30 % 259 412 55
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 270 35
95 % 223 270 47
90 % 223 270 52
70 % 223 270 62
50 % 262 400 33
40 % 262 400 45
30 % 293 502 36
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 268 38
95 % 223 268 55
90 % 223 268 59
70 % 223 271 61
50 % 223 271 90
40 % 223 271 111
30 % 223 271 124
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 272 30
95 % 227 277 39
90 % 227 277 43
70 % 227 277 55
50 % 266 408 27
40 % 266 411 36
30 % 266 411 56
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 264 41
95 % 223 269 52
90 % 223 269 56
70 % 223 269 66
50 % 223 272 89
40 % 223 272 110
30 % 262 396 64
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 87 247
95 % 220 263 57
90 % 222 267 60
70 % 222 267 70
50 % 222 267 94
40 % 222 267 115
30 % 222 267 127
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 51 692
95 % 198 234 65
90 % 198 234 70
70 % 198 234 81
50 % 198 234 108
40 % 198 234 133
30 % 198 234 142
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 224 272 29
95 % 224 272 43
90 % 224 272 48
70 % 224 272 58
50 % 260 400 30
40 % 260 403 41
30 % 260 403 58
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 269 33
95 % 223 270 44
90 % 223 270 50
70 % 223 270 59
50 % 259 392 37
40 % 259 395 46
30 % 259 395 62
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 190 217 51
95 % 223 268 53
90 % 223 268 57
70 % 223 268 68
50 % 223 268 93
40 % 223 268 114
30 % 223 268 126
Entity #21 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 222 259 43
95 % 222 259 59
90 % 222 259 63
70 % 222 259 75
50 % 222 259 98
40 % 222 259 120
30 % 222 259 131
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 198 233 48
95 % 198 233 66
90 % 198 233 71
70 % 198 233 82
50 % 212 306 83
40 % 212 306 102
30 % 212 306 114
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 221 262 42
95 % 223 270 45
90 % 223 270 51
70 % 223 270 60
50 % 259 396 32
40 % 259 399 43
30 % 259 399 61
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 269 36
95 % 223 269 49
90 % 223 269 53
70 % 223 269 63
50 % 260 400 31
40 % 260 400 44
30 % 260 402 59
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 225 274 27
95 % 231 280 37
90 % 231 280 41
70 % 231 280 52
50 % 231 280 87
40 % 231 280 106
30 % 255 336 93
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 224 273 28
95 % 224 274 41
90 % 224 274 45
70 % 224 274 56
50 % 252 339 71
40 % 252 342 84
30 % 252 342 97
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 222 269 34
95 % 222 269 46
90 % 224 273 46
70 % 224 273 57
50 % 262 401 28
40 % 263 405 38
30 % 296 514 30
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 68 91 212
95 % 223 269 51
90 % 223 269 55
70 % 223 269 65
50 % 259 395 35
40 % 259 395 47
30 % 290 501 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.