1N36

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position


Sequence Similarity Clusters for the Entities in PDB 1N36

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 222 267 37
95 % 223 268 51
90 % 223 268 54
70 % 223 268 65
50 % 265 394 25
40 % 265 394 37
30 % 295 490 29
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 269 35
95 % 223 269 47
90 % 223 269 50
70 % 223 269 60
50 % 259 388 34
40 % 291 487 18
30 % 291 487 31
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 164 217 48
95 % 223 276 36
90 % 223 276 40
70 % 259 401 20
50 % 259 403 23
40 % 259 403 34
30 % 259 403 55
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 270 33
95 % 223 270 44
90 % 223 270 48
70 % 223 270 57
50 % 262 393 32
40 % 262 393 44
30 % 292 491 32
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 268 36
95 % 223 268 52
90 % 223 268 55
70 % 223 270 58
50 % 223 270 87
40 % 223 270 108
30 % 223 270 120
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 272 28
95 % 227 277 35
90 % 227 277 39
70 % 227 277 50
50 % 266 401 24
40 % 266 404 33
30 % 266 404 54
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 264 38
95 % 223 269 49
90 % 223 269 52
70 % 223 269 62
50 % 223 271 86
40 % 223 271 106
30 % 262 389 63
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 87 234
95 % 220 263 53
90 % 222 267 56
70 % 222 267 66
50 % 222 267 90
40 % 222 267 111
30 % 222 267 123
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 51 647
95 % 198 234 62
90 % 198 234 66
70 % 198 234 77
50 % 198 234 103
40 % 198 234 129
30 % 198 234 140
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 224 272 27
95 % 224 272 40
90 % 224 272 45
70 % 224 272 54
50 % 260 393 28
40 % 260 393 39
30 % 260 393 58
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 269 31
95 % 223 270 41
90 % 223 270 46
70 % 223 270 55
50 % 259 387 33
40 % 259 390 42
30 % 259 390 61
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 190 217 49
95 % 223 268 50
90 % 223 268 53
70 % 223 268 64
50 % 223 268 89
40 % 223 268 110
30 % 223 268 122
Entity #21 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 222 259 41
95 % 222 259 56
90 % 222 259 59
70 % 222 259 69
50 % 222 259 94
40 % 222 259 116
30 % 222 259 129
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 198 233 45
95 % 198 233 63
90 % 198 233 67
70 % 198 233 78
50 % 212 301 78
40 % 212 301 96
30 % 212 301 113
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 221 262 39
95 % 223 270 42
90 % 223 270 47
70 % 223 270 56
50 % 259 389 31
40 % 259 392 40
30 % 259 392 60
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 269 34
95 % 223 269 46
90 % 223 269 49
70 % 223 269 59
50 % 260 393 29
40 % 260 393 41
30 % 260 395 57
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 225 274 24
95 % 231 280 33
90 % 231 280 38
70 % 231 280 49
50 % 231 280 83
40 % 231 280 102
30 % 255 334 87
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 224 273 26
95 % 224 274 37
90 % 224 274 41
70 % 224 274 51
50 % 252 336 65
40 % 252 339 75
30 % 252 339 89
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 222 269 32
95 % 222 269 43
90 % 224 273 42
70 % 224 273 52
50 % 262 394 26
40 % 263 398 36
30 % 295 500 28
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 68 91 202
95 % 223 269 48
90 % 223 269 51
70 % 223 269 61
50 % 259 388 35
40 % 259 388 45
30 % 289 488 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.