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Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position
Sequence Clustering and Redundancy Reduction Results
1N36
Sequence Clusters for the Sequence Entities in PDB 1N36
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 189 28
95% 159 190 47
90% 159 190 50
70% 159 190 60
50% 192 271 34
40% 192 271 46
30% 192 276 66
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 191 26
95% 159 191 43
90% 159 191 45
70% 159 191 56
50% 186 265 41
40% 208 318 35
30% 208 318 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 160 35
95% 159 198 34
90% 159 198 36
70% 186 277 24
50% 186 277 33
40% 186 277 45
30% 186 277 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 192 23
95% 159 192 40
90% 159 192 43
70% 159 192 54
50% 189 270 38
40% 189 270 51
30% 209 319 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 190 27
95% 159 190 48
90% 159 190 51
70% 159 190 61
50% 159 190 94
40% 159 190 119
30% 159 190 142
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 194 21
95% 163 199 33
90% 163 199 35
70% 163 199 47
50% 193 278 32
40% 193 278 43
30% 193 278 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 186 29
95% 159 191 45
90% 159 191 48
70% 159 191 58
50% 159 191 92
40% 159 191 117
30% 189 268 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 79 223
95% 156 185 49
90% 158 189 52
70% 158 189 62
50% 158 189 95
40% 158 189 120
30% 158 189 143
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 49 494
95% 144 168 61
90% 144 168 64
70% 144 168 80
50% 144 168 117
40% 144 168 140
30% 144 168 163
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 170 37
95% 144 170 59
90% 144 170 63
70% 144 170 78
50% 187 268 37
40% 187 268 50
30% 187 268 74
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 191 24
95% 159 192 37
90% 159 192 41
70% 159 192 52
50% 159 192 91
40% 186 265 54
30% 186 265 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 142 42
95% 159 190 46
90% 159 190 49
70% 159 190 59
50% 159 190 93
40% 159 190 118
30% 159 190 141
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 181 34
95% 158 181 53
90% 158 181 55
70% 158 181 69
50% 158 181 105
40% 158 181 132
30% 158 181 151
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 167 38
95% 144 167 63
90% 144 167 66
70% 144 167 82
50% 157 206 77
40% 157 206 101
30% 157 206 122
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 184 30
95% 159 192 38
90% 159 192 42
70% 159 192 53
50% 186 265 39
40% 186 266 52
30% 186 266 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 191 25
95% 159 191 42
90% 159 191 44
70% 159 191 55
50% 187 269 36
40% 187 269 49
30% 187 271 73
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 196 19
95% 167 202 30
90% 167 202 31
70% 167 202 45
50% 167 202 84
40% 167 202 108
30% 183 239 93
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 195 20
95% 160 196 36
90% 160 196 38
70% 160 196 49
50% 180 237 56
40% 180 238 74
30% 180 238 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 191 22
95% 158 191 39
90% 160 195 39
70% 160 195 50
50% 189 271 35
40% 190 273 47
30% 211 323 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 89 144
95% 159 191 44
90% 159 191 46
70% 159 191 57
50% 186 265 40
40% 186 265 55
30% 206 314 52
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.