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Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position
Sequence Clustering and Redundancy Reduction Results
1N36
Sequence Clusters for the Sequence Entities in PDB 1N36
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 187 27
95% 157 188 47
90% 157 188 50
70% 157 188 60
50% 190 269 34
40% 190 269 46
30% 190 274 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 189 25
95% 157 189 43
90% 157 189 46
70% 157 189 56
50% 184 263 41
40% 206 316 35
30% 206 316 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 158 35
95% 157 196 35
90% 157 196 37
70% 184 275 24
50% 184 275 33
40% 184 275 45
30% 184 275 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 190 22
95% 157 190 41
90% 157 190 44
70% 157 190 54
50% 187 268 38
40% 187 268 51
30% 207 317 50
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 188 26
95% 157 188 48
90% 157 188 51
70% 157 188 61
50% 157 188 94
40% 157 188 119
30% 157 188 142
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 192 20
95% 161 197 33
90% 161 197 35
70% 161 197 47
50% 191 276 32
40% 191 276 43
30% 191 276 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 184 28
95% 157 189 45
90% 157 189 48
70% 157 189 58
50% 157 189 92
40% 157 189 117
30% 187 266 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 79 221
95% 154 183 49
90% 156 187 52
70% 156 187 62
50% 156 187 95
40% 156 187 120
30% 156 187 143
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 49 492
95% 144 168 61
90% 144 168 64
70% 144 168 80
50% 144 168 117
40% 144 168 139
30% 144 168 161
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 170 37
95% 144 170 59
90% 144 170 63
70% 144 170 78
50% 185 266 37
40% 185 266 49
30% 185 266 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 189 23
95% 157 190 38
90% 157 190 42
70% 157 190 52
50% 157 190 91
40% 184 263 53
30% 184 263 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 140 42
95% 157 188 46
90% 157 188 49
70% 157 188 59
50% 157 188 93
40% 157 188 118
30% 157 188 141
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 179 34
95% 156 179 53
90% 156 179 55
70% 156 179 68
50% 156 179 105
40% 156 179 132
30% 156 179 151
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 166 38
95% 143 166 63
90% 143 166 66
70% 143 166 82
50% 157 206 75
40% 157 206 100
30% 157 206 120
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 182 29
95% 157 190 39
90% 157 190 43
70% 157 190 53
50% 184 263 39
40% 184 264 52
30% 184 264 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 189 24
95% 157 189 42
90% 157 189 45
70% 157 189 55
50% 185 267 36
40% 185 267 48
30% 185 269 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 194 18
95% 165 200 29
90% 165 200 30
70% 165 200 44
50% 165 200 86
40% 165 200 108
30% 180 236 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 193 19
95% 158 194 36
90% 158 194 38
70% 158 194 49
50% 177 234 56
40% 177 235 74
30% 177 235 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 189 21
95% 156 189 40
90% 158 193 39
70% 158 193 51
50% 187 269 35
40% 188 271 47
30% 209 321 43
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 87 155
95% 157 189 44
90% 157 189 47
70% 157 189 57
50% 184 263 40
40% 184 263 54
30% 204 312 53
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.