Sequence Similarity Clusters for the Entities in PDB 1N35

Entity #1 | Chains: B
5'-R(P*GP*GP*GP*GP*G)-3' rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-R(*AP*UP*UP*AP*GP*CP*CP*CP*CP*C)-3' rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Minor core protein lambda 3 protein, length: 1267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 10846
95 % 1 7 9971 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 7 9859
70 % 1 7 9374
50 % 1 7 8476
40 % 1 7 7769
30 % 1 7 6868

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.