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An Information Portal to 105339 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position
Sequence Clustering and Redundancy Reduction Results
1N34
Sequence Clusters for the Sequence Entities in PDB 1N34
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 87 159
95% 150 189 44
90% 150 189 47
70% 150 189 57
50% 175 263 40
40% 175 263 55
30% 195 312 51
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 187 28
95% 150 188 47
90% 150 188 50
70% 150 188 60
50% 181 269 34
40% 181 269 45
30% 181 274 65
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 189 26
95% 150 189 43
90% 150 189 46
70% 150 189 56
50% 175 263 41
40% 197 316 35
30% 197 316 45
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 158 35
95% 150 196 35
90% 150 196 37
70% 175 275 24
50% 175 275 33
40% 175 275 44
30% 175 275 69
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 190 23
95% 150 190 41
90% 150 190 44
70% 150 190 54
50% 178 268 38
40% 178 268 51
30% 198 317 48
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 188 27
95% 150 188 48
90% 150 188 51
70% 150 188 61
50% 150 188 94
40% 150 188 119
30% 150 188 142
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 192 21
95% 154 197 33
90% 154 197 35
70% 154 197 47
50% 182 276 32
40% 182 276 43
30% 182 276 66
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 184 29
95% 150 189 45
90% 150 189 48
70% 150 189 58
50% 150 189 92
40% 150 189 117
30% 178 266 76
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 79 222
95% 148 183 49
90% 150 187 52
70% 150 187 62
50% 150 187 95
40% 150 187 120
30% 150 187 143
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 49 491
95% 138 168 61
90% 138 168 64
70% 138 168 80
50% 138 168 117
40% 138 168 139
30% 138 168 161
Entity #2: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 170 37
95% 138 170 59
90% 138 170 63
70% 138 170 78
50% 176 266 37
40% 176 266 50
30% 176 266 73
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 140 42
95% 150 188 46
90% 150 188 49
70% 150 188 59
50% 150 188 93
40% 150 188 118
30% 150 188 141
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 179 34
95% 149 179 54
90% 149 179 56
70% 149 179 69
50% 149 179 105
40% 149 179 132
30% 149 179 151
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 189 24
95% 150 190 38
90% 150 190 42
70% 150 190 52
50% 150 190 91
40% 175 263 54
30% 175 263 75
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 166 38
95% 137 166 63
90% 137 166 66
70% 137 166 82
50% 148 205 77
40% 148 205 101
30% 148 205 120
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 182 31
95% 150 190 39
90% 150 190 43
70% 150 190 53
50% 175 263 39
40% 175 264 52
30% 175 264 74
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 189 25
95% 150 189 42
90% 150 189 45
70% 150 189 55
50% 176 267 36
40% 176 267 49
30% 176 269 72
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 194 19
95% 158 200 29
90% 158 200 30
70% 158 200 45
50% 158 200 86
40% 158 200 108
30% 174 237 93
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 193 20
95% 151 194 36
90% 151 194 38
70% 151 194 50
50% 171 235 56
40% 171 236 73
30% 171 236 96
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 189 22
95% 149 189 40
90% 151 193 39
70% 151 193 51
50% 178 269 35
40% 179 271 46
30% 200 321 44
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.