1N34

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position


Sequence Similarity Clusters for the Entities in PDB 1N34

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 91 211
95 % 215 269 51
90 % 215 269 54
70 % 215 269 65
50 % 249 393 36
40 % 249 393 47
30 % 280 499 35
Entity #11 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 267 39
95 % 215 268 54
90 % 215 268 57
70 % 215 268 69
50 % 255 400 26
40 % 255 400 37
30 % 286 500 32
Entity #12 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 215 269 36
95 % 215 269 50
90 % 215 269 53
70 % 215 269 64
50 % 249 393 35
40 % 282 499 19
30 % 282 499 33
Entity #13 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 157 217 50
95 % 215 276 40
90 % 215 276 44
70 % 249 406 22
50 % 249 411 25
40 % 249 411 35
30 % 249 411 55
Entity #14 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 215 270 34
95 % 215 270 47
90 % 215 270 51
70 % 215 270 61
50 % 252 398 33
40 % 252 398 46
30 % 283 500 36
Entity #15 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 215 268 38
95 % 215 268 55
90 % 215 268 58
70 % 215 270 62
50 % 215 270 90
40 % 215 270 112
30 % 215 270 124
Entity #16 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 215 272 30
95 % 219 277 39
90 % 219 277 43
70 % 219 277 55
50 % 256 406 27
40 % 256 409 36
30 % 256 409 56
Entity #17 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 215 264 40
95 % 215 269 52
90 % 215 269 55
70 % 215 269 66
50 % 215 271 89
40 % 215 271 110
30 % 252 394 63
Entity #18 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 87 246
95 % 213 263 57
90 % 215 267 59
70 % 215 267 70
50 % 215 267 94
40 % 215 267 115
30 % 215 267 127
Entity #19 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 51 692
95 % 192 234 64
90 % 192 234 68
70 % 192 234 80
50 % 192 234 108
40 % 192 234 133
30 % 192 234 142
Entity #2 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 216 272 29
95 % 216 272 43
90 % 216 272 48
70 % 216 272 58
50 % 250 398 30
40 % 250 401 40
30 % 250 401 58
Entity #21 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 217 51
95 % 215 268 53
90 % 215 268 56
70 % 215 268 68
50 % 215 268 92
40 % 215 268 113
30 % 215 268 125
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 259 43
95 % 214 259 59
90 % 214 259 63
70 % 214 259 75
50 % 214 259 97
40 % 214 259 120
30 % 214 259 130
Entity #3 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 215 269 32
95 % 215 270 44
90 % 215 270 49
70 % 215 270 59
50 % 249 392 34
40 % 249 395 45
30 % 249 395 62
Entity #4 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 192 233 47
95 % 192 233 65
90 % 192 233 69
70 % 192 233 81
50 % 204 306 83
40 % 204 306 102
30 % 204 306 113
Entity #5 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 213 262 41
95 % 215 270 45
90 % 215 270 50
70 % 215 270 60
50 % 249 394 32
40 % 249 397 42
30 % 249 397 61
Entity #6 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 215 269 35
95 % 215 269 49
90 % 215 269 52
70 % 215 269 63
50 % 250 398 31
40 % 250 398 43
30 % 250 400 59
Entity #7 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 217 274 27
95 % 223 280 36
90 % 223 280 41
70 % 223 280 52
50 % 223 280 87
40 % 223 280 106
30 % 247 334 90
Entity #8 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 216 273 28
95 % 216 274 41
90 % 216 274 45
70 % 216 274 56
50 % 244 338 71
40 % 244 341 79
30 % 244 341 93
Entity #9 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 269 33
95 % 214 269 46
90 % 216 273 46
70 % 216 273 57
50 % 252 399 29
40 % 253 403 38
30 % 286 512 30

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.