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Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position
Sequence Clustering and Redundancy Reduction Results
1N34
Sequence Clusters for the Sequence Entities in PDB 1N34
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 113 133
95% 202 255 45
90% 202 255 48
70% 202 255 60
50% 252 363 41
40% 252 363 56
30% 260 399 58
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 200 252 29
95% 202 254 48
90% 202 254 51
70% 202 254 63
50% 258 369 34
40% 258 369 47
30% 258 374 66
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 202 255 27
95% 202 255 44
90% 202 255 47
70% 202 255 59
50% 252 363 42
40% 262 403 39
30% 262 403 53
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 224 37
95% 202 262 36
90% 202 262 38
70% 252 375 24
50% 252 375 33
40% 252 375 46
30% 252 375 71
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 202 256 24
95% 202 256 42
90% 202 256 45
70% 202 256 57
50% 252 365 39
40% 252 365 53
30% 260 401 55
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 202 254 28
95% 202 254 49
90% 202 254 52
70% 202 254 64
50% 202 254 97
40% 202 254 122
30% 202 254 144
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 202 258 21
95% 206 263 35
90% 206 263 37
70% 206 263 48
50% 259 376 32
40% 259 376 44
30% 259 376 69
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 202 250 30
95% 202 255 46
90% 202 255 49
70% 202 255 61
50% 202 255 95
40% 202 255 120
30% 252 363 78
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 92 218
95% 200 249 51
90% 202 253 53
70% 202 253 65
50% 202 253 98
40% 202 253 124
30% 202 253 146
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 49 460
95% 185 221 64
90% 185 221 68
70% 185 221 81
50% 185 221 116
40% 185 221 144
30% 185 221 166
Entity #2: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 185 223 38
95% 185 223 63
90% 185 223 67
70% 185 223 80
50% 253 366 38
40% 253 366 52
30% 253 366 74
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 169 193 43
95% 202 254 47
90% 202 254 50
70% 202 254 62
50% 202 254 96
40% 202 254 121
30% 202 254 143
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 201 238 34
95% 201 238 55
90% 201 238 59
70% 201 238 71
50% 201 238 110
40% 201 238 133
30% 201 238 153
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 202 255 25
95% 202 256 39
90% 202 256 43
70% 202 256 55
50% 202 256 94
40% 252 363 55
30% 252 363 77
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 184 219 39
95% 184 219 66
90% 184 219 70
70% 184 219 83
50% 210 282 81
40% 210 282 101
30% 210 282 123
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 200 248 32
95% 202 256 40
90% 202 256 44
70% 202 256 56
50% 252 363 40
40% 252 364 54
30% 252 364 75
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 202 255 26
95% 202 255 43
90% 202 255 46
70% 202 255 58
50% 253 367 37
40% 253 367 51
30% 253 369 72
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 204 260 18
95% 210 266 34
90% 210 266 36
70% 210 266 47
50% 210 266 88
40% 210 266 110
30% 236 313 94
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 259 20
95% 203 260 37
90% 203 260 39
70% 203 260 50
50% 230 308 57
40% 230 309 73
30% 230 309 97
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 201 255 23
95% 201 255 41
90% 203 259 40
70% 203 259 52
50% 255 369 36
40% 256 371 48
30% 265 408 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.