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An Information Portal to 108263 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position
Sequence Clustering and Redundancy Reduction Results
1N34
Sequence Clusters for the Sequence Entities in PDB 1N34
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 90 158
95% 159 199 41
90% 159 199 43
70% 159 199 55
50% 185 276 41
40% 185 276 54
30% 205 329 50
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 197 29
95% 159 198 45
90% 159 198 47
70% 159 198 59
50% 191 282 35
40% 191 282 45
30% 211 333 46
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 199 25
95% 159 199 40
90% 159 199 42
70% 159 199 54
50% 185 276 42
40% 207 333 35
30% 207 333 45
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 166 36
95% 159 206 31
90% 159 206 33
70% 185 288 24
50% 185 288 34
40% 185 288 44
30% 185 288 69
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 200 22
95% 159 200 38
90% 159 200 40
70% 159 200 51
50% 188 281 39
40% 188 281 50
30% 208 334 49
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 198 26
95% 159 198 46
90% 159 198 48
70% 159 198 60
50% 159 198 92
40% 159 198 114
30% 159 198 138
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 202 20
95% 163 207 30
90% 163 207 32
70% 163 207 43
50% 192 289 33
40% 192 289 43
30% 192 289 67
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 194 30
95% 159 199 42
90% 159 199 44
70% 159 199 56
50% 159 199 89
40% 159 199 112
30% 188 279 76
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 80 222
95% 157 193 50
90% 159 197 49
70% 159 197 61
50% 159 197 93
40% 159 197 116
30% 159 197 139
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 49 508
95% 144 174 71
90% 144 174 75
70% 144 174 89
50% 144 174 130
40% 144 174 148
30% 144 174 164
Entity #2: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 202 19
95% 160 202 33
90% 160 202 36
70% 160 202 47
50% 186 279 38
40% 186 279 49
30% 186 279 73
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 149 54
95% 159 198 44
90% 159 198 46
70% 159 198 58
50% 159 198 91
40% 159 198 113
30% 159 198 137
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 189 32
95% 158 189 52
90% 158 189 55
70% 158 189 67
50% 158 189 112
40% 158 189 135
30% 158 189 153
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 199 23
95% 159 200 35
90% 159 200 38
70% 159 200 48
50% 159 200 88
40% 185 276 53
30% 185 276 75
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 173 48
95% 144 173 72
90% 144 173 76
70% 144 173 91
50% 155 214 76
40% 155 214 102
30% 155 214 122
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 192 31
95% 159 200 36
90% 159 200 39
70% 159 200 49
50% 185 276 40
40% 185 277 51
30% 185 277 74
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 199 24
95% 159 199 39
90% 159 199 41
70% 159 199 52
50% 186 280 37
40% 186 280 48
30% 186 282 72
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 204 17
95% 167 210 29
90% 167 210 31
70% 167 210 42
50% 167 210 82
40% 167 210 107
30% 184 248 87
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 203 18
95% 160 204 32
90% 160 204 34
70% 160 204 44
50% 181 246 54
40% 181 247 71
30% 181 247 94
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 199 21
95% 158 199 37
90% 160 203 35
70% 160 203 45
50% 188 282 36
40% 189 284 46
30% 210 338 44
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.