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Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position
Sequence Clustering and Redundancy Reduction Results
1N34
Sequence Clusters for the Sequence Entities in PDB 1N34
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 89 181
95% 179 219 48
90% 179 219 52
70% 179 219 62
50% 206 300 43
40% 206 300 52
30% 226 364 46
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 217 36
95% 179 218 51
90% 179 218 55
70% 179 218 66
50% 212 306 31
40% 212 306 42
30% 232 368 40
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 219 34
95% 179 219 47
90% 179 219 51
70% 179 219 61
50% 206 300 42
40% 228 369 30
30% 228 370 38
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 182 46
95% 179 226 39
90% 179 226 43
70% 206 311 22
50% 206 312 30
40% 206 312 41
30% 206 312 57
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 220 32
95% 179 220 45
90% 179 220 49
70% 179 220 59
50% 209 305 39
40% 209 305 50
30% 229 369 44
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 218 35
95% 179 218 52
90% 179 218 56
70% 179 219 64
50% 179 219 92
40% 179 219 114
30% 179 219 128
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 222 29
95% 183 227 36
90% 183 227 40
70% 183 227 52
50% 213 313 29
40% 213 314 39
30% 213 314 54
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 214 37
95% 179 219 49
90% 179 219 53
70% 179 219 63
50% 179 219 91
40% 179 220 113
30% 209 303 70
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 80 226
95% 177 213 56
90% 179 217 58
70% 179 217 69
50% 179 217 94
40% 179 217 116
30% 179 217 130
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 49 532
95% 164 194 64
90% 164 194 67
70% 164 194 79
50% 164 194 113
40% 164 194 131
30% 164 194 150
Entity #2: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 180 222 28
95% 180 222 41
90% 180 222 46
70% 180 222 56
50% 207 303 38
40% 207 303 48
30% 207 303 67
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 169 49
95% 179 218 50
90% 179 218 54
70% 179 218 65
50% 179 218 93
40% 179 218 115
30% 179 218 129
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 209 40
95% 178 209 59
90% 178 209 62
70% 178 209 73
50% 178 209 100
40% 178 209 123
30% 178 209 135
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 219 30
95% 179 220 42
90% 179 220 47
70% 179 220 57
50% 206 299 41
40% 206 300 51
30% 206 300 69
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 193 45
95% 164 193 65
90% 164 193 68
70% 164 193 80
50% 176 237 77
40% 176 237 102
30% 176 237 121
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 212 38
95% 179 220 43
90% 179 220 48
70% 179 220 58
50% 206 300 40
40% 206 301 49
30% 206 301 68
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 219 33
95% 179 219 46
90% 179 219 50
70% 179 219 60
50% 207 304 37
40% 207 304 47
30% 207 306 63
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 181 224 25
95% 187 230 24
90% 187 230 29
70% 187 230 41
50% 187 230 83
40% 187 230 108
30% 204 269 80
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 180 223 27
95% 180 224 40
90% 180 224 44
70% 180 224 54
50% 201 267 51
40% 201 268 64
30% 201 268 83
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 219 31
95% 178 219 44
90% 180 223 45
70% 180 223 55
50% 209 306 35
40% 210 308 43
30% 231 373 37
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.