Sequence Similarity Clusters for the Entities in PDB 1N34

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 90 195
95 % 204 247 45
90 % 204 247 50
70 % 204 247 60
50 % 231 335 39
40 % 231 335 48
30 % 251 403 45
Entity #11 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 203 245 35
95 % 204 246 48
90 % 204 246 53
70 % 204 246 64
50 % 237 341 29
40 % 237 341 39
30 % 257 407 41
Entity #12 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 204 247 33
95 % 204 247 44
90 % 204 247 49
70 % 204 247 59
50 % 231 335 38
40 % 253 408 26
30 % 253 409 40
Entity #13 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 151 200 46
95 % 204 254 36
90 % 204 254 41
70 % 231 346 23
50 % 231 347 28
40 % 231 347 38
30 % 231 347 57
Entity #14 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 204 248 31
95 % 204 248 42
90 % 204 248 47
70 % 204 248 57
50 % 234 340 34
40 % 234 340 46
30 % 254 408 44
Entity #15 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 204 246 34
95 % 204 246 49
90 % 204 246 54
70 % 204 247 62
50 % 204 247 87
40 % 204 247 109
30 % 204 247 120
Entity #16 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 204 250 28
95 % 208 255 34
90 % 208 255 39
70 % 208 255 49
50 % 238 348 26
40 % 238 349 37
30 % 238 349 56
Entity #17 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 204 242 36
95 % 204 247 46
90 % 204 247 51
70 % 204 247 61
50 % 204 247 86
40 % 204 248 107
30 % 234 338 62
Entity #18 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 84 229
95 % 202 241 50
90 % 204 245 55
70 % 204 245 65
50 % 204 245 89
40 % 204 245 111
30 % 204 245 122
Entity #19 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 49 587
95 % 181 212 65
90 % 181 212 68
70 % 181 212 79
50 % 181 212 110
40 % 181 212 131
30 % 181 212 143
Entity #2 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 205 250 27
95 % 205 250 38
90 % 205 250 44
70 % 205 250 53
50 % 232 338 33
40 % 232 338 44
30 % 232 338 59
Entity #21 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 196 47
95 % 204 246 47
90 % 204 246 52
70 % 204 246 63
50 % 204 246 88
40 % 204 246 110
30 % 204 246 121
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 203 237 40
95 % 203 237 57
90 % 203 237 60
70 % 203 237 70
50 % 203 237 95
40 % 203 237 117
30 % 203 237 131
Entity #3 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 204 247 29
95 % 204 248 39
90 % 204 248 45
70 % 204 248 54
50 % 231 334 37
40 % 231 335 47
30 % 231 335 61
Entity #4 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 181 211 44
95 % 181 211 66
90 % 181 211 69
70 % 181 211 80
50 % 193 262 82
40 % 193 262 100
30 % 193 262 116
Entity #5 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 202 240 37
95 % 204 248 40
90 % 204 248 46
70 % 204 248 55
50 % 231 335 35
40 % 231 336 45
30 % 231 336 60
Entity #6 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 204 247 32
95 % 204 247 43
90 % 204 247 48
70 % 204 247 58
50 % 232 339 32
40 % 232 339 43
30 % 232 341 58
Entity #7 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 206 252 25
95 % 212 258 33
90 % 212 258 37
70 % 212 258 48
50 % 212 258 84
40 % 212 258 103
30 % 229 297 80
Entity #8 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 205 251 26
95 % 205 252 37
90 % 205 252 42
70 % 205 252 51
50 % 226 297 51
40 % 226 298 63
30 % 226 298 89
Entity #9 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 203 247 30
95 % 203 247 41
90 % 205 251 43
70 % 205 251 52
50 % 234 341 31
40 % 235 343 40
30 % 256 412 39

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.