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Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position
Sequence Clustering and Redundancy Reduction Results
1N34
Sequence Clusters for the Sequence Entities in PDB 1N34
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 89 144
95% 152 191 44
90% 152 191 46
70% 152 191 57
50% 177 265 40
40% 177 265 55
30% 197 314 52
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 189 28
95% 152 190 47
90% 152 190 50
70% 152 190 60
50% 183 271 34
40% 183 271 46
30% 183 276 66
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 191 26
95% 152 191 43
90% 152 191 45
70% 152 191 56
50% 177 265 41
40% 199 318 35
30% 199 318 45
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 115 160 35
95% 152 198 34
90% 152 198 36
70% 177 277 24
50% 177 277 33
40% 177 277 45
30% 177 277 69
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 192 23
95% 152 192 40
90% 152 192 43
70% 152 192 54
50% 180 270 38
40% 180 270 51
30% 200 319 49
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 190 27
95% 152 190 48
90% 152 190 51
70% 152 190 61
50% 152 190 94
40% 152 190 119
30% 152 190 142
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 194 21
95% 156 199 33
90% 156 199 35
70% 156 199 47
50% 184 278 32
40% 184 278 43
30% 184 278 67
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 186 29
95% 152 191 45
90% 152 191 48
70% 152 191 58
50% 152 191 92
40% 152 191 117
30% 180 268 78
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 79 223
95% 150 185 49
90% 152 189 52
70% 152 189 62
50% 152 189 95
40% 152 189 120
30% 152 189 143
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 49 494
95% 138 168 61
90% 138 168 64
70% 138 168 80
50% 138 168 117
40% 138 168 140
30% 138 168 163
Entity #2: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 170 37
95% 138 170 59
90% 138 170 63
70% 138 170 78
50% 178 268 37
40% 178 268 50
30% 178 268 74
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 124 142 42
95% 152 190 46
90% 152 190 49
70% 152 190 59
50% 152 190 93
40% 152 190 118
30% 152 190 141
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 181 34
95% 151 181 53
90% 151 181 55
70% 151 181 69
50% 151 181 105
40% 151 181 132
30% 151 181 151
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 191 24
95% 152 192 37
90% 152 192 41
70% 152 192 52
50% 152 192 91
40% 177 265 54
30% 177 265 77
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 167 38
95% 138 167 63
90% 138 167 66
70% 138 167 82
50% 149 206 77
40% 149 206 101
30% 149 206 122
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 184 30
95% 152 192 38
90% 152 192 42
70% 152 192 53
50% 177 265 39
40% 177 266 52
30% 177 266 76
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 191 25
95% 152 191 42
90% 152 191 44
70% 152 191 55
50% 178 269 36
40% 178 269 49
30% 178 271 73
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 196 19
95% 160 202 30
90% 160 202 31
70% 160 202 45
50% 160 202 84
40% 160 202 108
30% 176 239 93
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 195 20
95% 153 196 36
90% 153 196 38
70% 153 196 49
50% 173 237 56
40% 173 238 74
30% 173 238 96
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 191 22
95% 151 191 39
90% 153 195 39
70% 153 195 50
50% 180 271 35
40% 181 273 47
30% 202 323 44
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.