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Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position
Sequence Clustering and Redundancy Reduction Results
1N34
Sequence Clusters for the Sequence Entities in PDB 1N34
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 113 138
95% 213 268 44
90% 213 268 46
70% 213 268 56
50% 263 376 40
40% 263 376 54
30% 291 432 56
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 211 265 27
95% 213 267 47
90% 213 267 49
70% 213 267 59
50% 269 382 34
40% 269 382 45
30% 269 387 65
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 268 25
95% 213 268 43
90% 213 268 45
70% 213 268 55
50% 263 376 41
40% 293 436 38
30% 293 436 51
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 237 35
95% 213 275 35
90% 213 275 37
70% 263 388 24
50% 263 388 33
40% 263 388 44
30% 263 388 68
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 269 22
95% 213 269 41
90% 213 269 43
70% 213 269 53
50% 263 378 38
40% 263 378 51
30% 291 434 54
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 267 26
95% 213 267 48
90% 213 267 50
70% 213 267 60
50% 213 267 93
40% 213 267 119
30% 213 267 140
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 271 20
95% 217 276 32
90% 217 276 34
70% 217 276 47
50% 270 389 32
40% 270 389 43
30% 270 389 67
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 263 28
95% 213 268 45
90% 213 268 47
70% 213 268 57
50% 213 268 91
40% 213 268 117
30% 263 376 76
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 92 220
95% 211 262 49
90% 213 266 51
70% 213 266 61
50% 213 266 94
40% 213 266 120
30% 213 266 142
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 49 466
95% 196 232 61
90% 196 232 64
70% 196 232 78
50% 196 232 113
40% 196 232 138
30% 196 232 159
Entity #2: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 234 37
95% 196 234 59
90% 196 234 63
70% 196 234 77
50% 264 379 37
40% 264 379 49
30% 264 379 72
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 180 206 42
95% 213 267 46
90% 213 267 48
70% 213 267 58
50% 213 267 92
40% 213 267 118
30% 213 267 139
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 212 249 33
95% 212 249 52
90% 212 249 55
70% 212 249 66
50% 212 249 103
40% 212 249 130
30% 212 249 150
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 268 23
95% 213 269 38
90% 213 269 41
70% 213 269 51
50% 213 269 90
40% 263 376 53
30% 263 376 75
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 230 38
95% 195 230 62
90% 195 230 65
70% 195 230 79
50% 221 293 73
40% 221 293 98
30% 221 293 119
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 211 261 29
95% 213 269 39
90% 213 269 42
70% 213 269 52
50% 263 376 39
40% 263 377 52
30% 263 377 74
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 268 24
95% 213 268 42
90% 213 268 44
70% 213 268 54
50% 264 380 36
40% 264 380 48
30% 264 382 71
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 215 273 18
95% 221 279 29
90% 221 279 30
70% 221 279 44
50% 221 279 82
40% 221 279 106
30% 247 326 94
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 214 272 19
95% 214 273 36
90% 214 273 38
70% 214 273 49
50% 241 321 56
40% 241 322 73
30% 241 322 96
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 212 268 21
95% 212 268 40
90% 214 272 39
70% 214 272 50
50% 266 382 35
40% 267 384 46
30% 296 441 47
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.