Sequence Similarity Clusters for the Entities in PDB 1N34

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 90 190
95 % 196 239 35
90 % 196 239 40
70 % 196 239 49
50 % 223 324 39
40 % 223 324 49
30 % 243 392 47
Entity #11 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 195 237 25
95 % 196 238 38
90 % 196 238 43
70 % 196 238 53
50 % 229 330 30
40 % 229 330 40
30 % 249 396 41
Entity #12 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 196 239 23
95 % 196 239 34
90 % 196 239 39
70 % 196 239 48
50 % 223 324 38
40 % 245 397 27
30 % 245 398 39
Entity #13 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 145 194 42
95 % 196 246 22
90 % 196 246 27
70 % 223 335 23
50 % 223 336 29
40 % 223 336 39
30 % 223 336 56
Entity #14 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 196 240 20
95 % 196 240 32
90 % 196 240 37
70 % 196 240 46
50 % 226 329 35
40 % 226 329 46
30 % 246 397 46
Entity #15 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 196 238 24
95 % 196 238 39
90 % 196 238 44
70 % 196 239 51
50 % 196 239 82
40 % 196 239 108
30 % 196 239 124
Entity #16 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 196 242 16
95 % 200 247 21
90 % 200 247 26
70 % 200 247 37
50 % 230 337 27
40 % 230 338 38
30 % 230 338 54
Entity #17 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 196 234 26
95 % 196 239 36
90 % 196 239 41
70 % 196 239 50
50 % 196 239 81
40 % 196 240 106
30 % 226 327 65
Entity #18 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 84 225
95 % 194 233 40
90 % 196 237 45
70 % 196 237 54
50 % 196 237 87
40 % 196 237 113
30 % 196 237 128
Entity #19 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 49 566
95 % 174 205 63
90 % 174 205 66
70 % 174 205 75
50 % 174 205 109
40 % 174 205 129
30 % 174 205 145
Entity #2 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 197 242 15
95 % 197 242 26
90 % 197 242 31
70 % 197 242 42
50 % 224 327 34
40 % 224 327 44
30 % 224 327 60
Entity #21 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 188 48
95 % 196 238 37
90 % 196 238 42
70 % 196 238 52
50 % 196 238 83
40 % 196 238 110
30 % 196 238 126
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 195 229 39
95 % 195 229 54
90 % 195 229 58
70 % 195 229 69
50 % 195 229 97
40 % 195 229 118
30 % 195 229 133
Entity #3 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 196 239 17
95 % 196 240 27
90 % 196 240 33
70 % 196 240 43
50 % 223 323 37
40 % 223 324 47
30 % 223 324 63
Entity #4 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 204 43
95 % 174 204 64
90 % 174 204 67
70 % 174 204 76
50 % 186 252 68
40 % 186 252 93
30 % 186 252 110
Entity #5 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 194 232 27
95 % 196 240 28
90 % 196 240 34
70 % 196 240 44
50 % 223 324 36
40 % 223 325 45
30 % 223 325 62
Entity #6 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 196 239 22
95 % 196 239 33
90 % 196 239 38
70 % 196 239 47
50 % 224 328 33
40 % 224 328 43
30 % 224 330 59
Entity #7 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 198 244 13
95 % 204 250 20
90 % 204 250 25
70 % 204 250 35
50 % 204 250 70
40 % 204 250 94
30 % 221 289 80
Entity #8 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 197 243 14
95 % 197 244 25
90 % 197 244 29
70 % 197 244 40
50 % 218 289 50
40 % 218 290 62
30 % 218 290 83
Entity #9 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 195 239 19
95 % 195 239 31
90 % 197 243 30
70 % 197 243 41
50 % 226 330 31
40 % 227 332 41
30 % 248 401 37

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.