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An Information Portal to 108263 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
Sequence Clustering and Redundancy Reduction Results
1N33
Sequence Clusters for the Sequence Entities in PDB 1N33
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 199 21
95% 129 199 37
90% 130 203 35
70% 130 203 45
50% 152 282 36
40% 153 284 46
30% 172 338 44
Entity #11: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 90 158
95% 129 199 41
90% 129 199 43
70% 129 199 55
50% 149 276 41
40% 149 276 54
30% 167 329 50
Entity #12: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 197 29
95% 129 198 45
90% 129 198 47
70% 129 198 59
50% 155 282 35
40% 155 282 45
30% 173 333 46
Entity #13: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 199 25
95% 129 199 40
90% 129 199 42
70% 129 199 54
50% 149 276 42
40% 169 333 35
30% 169 333 45
Entity #14: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 166 36
95% 129 206 31
90% 129 206 33
70% 149 288 24
50% 149 288 34
40% 149 288 44
30% 149 288 69
Entity #15: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 200 22
95% 129 200 38
90% 129 200 40
70% 129 200 51
50% 152 281 39
40% 152 281 50
30% 170 334 49
Entity #16: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 198 26
95% 129 198 46
90% 129 198 48
70% 129 198 60
50% 129 198 92
40% 129 198 114
30% 129 198 138
Entity #17: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 202 20
95% 133 207 30
90% 133 207 32
70% 133 207 43
50% 156 289 33
40% 156 289 43
30% 156 289 67
Entity #18: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 194 30
95% 129 199 42
90% 129 199 44
70% 129 199 56
50% 129 199 89
40% 129 199 112
30% 152 279 76
Entity #19: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 80 222
95% 128 193 50
90% 129 197 49
70% 129 197 61
50% 129 197 93
40% 129 197 116
30% 129 197 139
Entity #2: Chains: Y - ANTICODON STEM-LOOP OF SER TRANSFER RNA rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 49 508
95% 120 174 71
90% 120 174 75
70% 120 174 89
50% 120 174 130
40% 120 174 148
30% 120 174 164
Entity #21: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 202 19
95% 130 202 33
90% 130 202 36
70% 130 202 47
50% 150 279 38
40% 150 279 49
30% 150 279 73
Entity #22: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 149 54
95% 129 198 44
90% 129 198 46
70% 129 198 58
50% 129 198 91
40% 129 198 113
30% 129 198 137
Entity #23: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 189 32
95% 129 189 52
90% 129 189 55
70% 129 189 67
50% 129 189 112
40% 129 189 135
30% 129 189 153
Entity #3: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 199 23
95% 129 200 35
90% 129 200 38
70% 129 200 48
50% 129 200 88
40% 149 276 53
30% 149 276 75
Entity #5: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 173 48
95% 120 173 72
90% 120 173 76
70% 120 173 91
50% 125 214 76
40% 125 214 102
30% 125 214 122
Entity #6: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 192 31
95% 129 200 36
90% 129 200 39
70% 129 200 49
50% 149 276 40
40% 149 277 51
30% 149 277 74
Entity #7: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 199 24
95% 129 199 39
90% 129 199 41
70% 129 199 52
50% 150 280 37
40% 150 280 48
30% 150 282 72
Entity #8: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 204 17
95% 137 210 29
90% 137 210 31
70% 137 210 42
50% 137 210 82
40% 137 210 107
30% 154 248 87
Entity #9: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 203 18
95% 130 204 32
90% 130 204 34
70% 130 204 44
50% 150 246 54
40% 150 247 71
30% 150 247 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.