POP-OUT | CLOSE

An Information Portal to 106858 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
Sequence Clustering and Redundancy Reduction Results
1N33
Sequence Clusters for the Sequence Entities in PDB 1N33
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 196 22
95% 127 196 37
90% 128 200 36
70% 128 200 47
50% 149 276 36
40% 150 278 46
30% 169 330 45
Entity #11: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 90 140
95% 127 196 43
90% 127 196 45
70% 127 196 56
50% 146 270 41
40% 146 270 54
30% 164 321 50
Entity #12: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 194 28
95% 127 195 46
90% 127 195 48
70% 127 195 59
50% 152 276 35
40% 152 276 45
30% 170 326 46
Entity #13: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 196 26
95% 127 196 42
90% 127 196 44
70% 127 196 55
50% 146 270 42
40% 166 325 36
30% 166 325 47
Entity #14: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 165 35
95% 127 203 31
90% 127 203 33
70% 146 282 24
50% 146 282 34
40% 146 282 44
30% 146 282 69
Entity #15: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 197 23
95% 127 197 38
90% 127 197 40
70% 127 197 52
50% 149 275 39
40% 149 275 51
30% 167 326 49
Entity #16: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 195 27
95% 127 195 47
90% 127 195 49
70% 127 195 60
50% 127 195 92
40% 127 195 116
30% 127 195 139
Entity #17: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 199 19
95% 131 204 30
90% 131 204 32
70% 131 204 44
50% 153 283 33
40% 153 283 43
30% 153 283 68
Entity #18: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 191 29
95% 127 196 44
90% 127 196 46
70% 127 196 57
50% 127 196 89
40% 127 196 114
30% 149 273 77
Entity #19: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 80 221
95% 126 190 49
90% 127 194 50
70% 127 194 61
50% 127 194 93
40% 127 194 117
30% 127 194 141
Entity #2: Chains: Y - ANTICODON STEM-LOOP OF SER TRANSFER RNA rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 49 496
95% 118 172 70
90% 118 172 74
70% 118 172 88
50% 118 172 125
40% 118 172 146
30% 118 172 165
Entity #21: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 174 47
95% 118 174 69
90% 118 174 73
70% 118 174 87
50% 147 273 38
40% 147 273 49
30% 147 273 73
Entity #22: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 146 54
95% 127 195 45
90% 127 195 47
70% 127 195 58
50% 127 195 91
40% 127 195 115
30% 127 195 138
Entity #23: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 186 32
95% 127 186 51
90% 127 186 54
70% 127 186 66
50% 127 186 110
40% 127 186 133
30% 127 186 151
Entity #3: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 196 24
95% 127 197 35
90% 127 197 38
70% 127 197 50
50% 127 197 88
40% 146 270 53
30% 146 270 76
Entity #5: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 171 48
95% 118 171 72
90% 118 171 76
70% 118 171 90
50% 123 210 76
40% 123 210 101
30% 123 210 121
Entity #6: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 189 30
95% 127 197 36
90% 127 197 39
70% 127 197 51
50% 146 270 40
40% 146 271 52
30% 146 271 75
Entity #7: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 196 25
95% 127 196 40
90% 127 196 42
70% 127 196 54
50% 147 274 37
40% 147 274 48
30% 147 276 71
Entity #8: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 201 17
95% 135 207 29
90% 135 207 31
70% 135 207 42
50% 135 207 81
40% 135 207 108
30% 151 244 90
Entity #9: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 200 18
95% 128 201 33
90% 128 201 35
70% 128 201 46
50% 147 242 55
40% 147 243 71
30% 147 243 95
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.