1N33

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin


Sequence Similarity Clusters for the Entities in PDB 1N33

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 269 32
95 % 177 269 44
90 % 178 273 44
70 % 178 273 55
50 % 208 397 26
40 % 209 401 35
30 % 236 506 29
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 91 207
95 % 177 269 49
90 % 177 269 52
70 % 177 269 63
50 % 205 391 34
40 % 205 391 45
30 % 230 494 35
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 267 37
95 % 177 268 52
90 % 177 268 55
70 % 177 268 67
50 % 211 397 25
40 % 211 397 36
30 % 236 496 31
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 269 35
95 % 177 269 48
90 % 177 269 51
70 % 177 269 62
50 % 205 391 33
40 % 232 493 18
30 % 232 493 33
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 217 48
95 % 177 276 37
90 % 177 276 41
70 % 205 404 20
50 % 205 409 23
40 % 205 409 33
30 % 205 409 55
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 270 33
95 % 177 270 45
90 % 177 270 49
70 % 177 270 59
50 % 208 396 31
40 % 208 396 44
30 % 233 497 34
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 268 36
95 % 177 268 53
90 % 177 268 56
70 % 177 270 60
50 % 177 270 89
40 % 177 270 111
30 % 177 270 123
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 272 29
95 % 181 277 36
90 % 181 277 40
70 % 181 277 51
50 % 212 404 24
40 % 212 407 34
30 % 212 407 56
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 264 38
95 % 177 269 50
90 % 177 269 53
70 % 177 269 64
50 % 177 271 88
40 % 177 271 109
30 % 208 392 64
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 87 242
95 % 176 263 54
90 % 177 267 57
70 % 177 267 68
50 % 177 267 93
40 % 177 267 114
30 % 177 267 127
Entity #2 | Chains: Y
ANTICODON STEM-LOOP OF SER TRANSFER RNA rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 51 684
95 % 160 234 62
90 % 160 234 66
70 % 160 234 78
50 % 160 234 107
40 % 160 234 132
30 % 160 234 141
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 272 28
95 % 178 272 41
90 % 178 272 46
70 % 178 272 56
50 % 206 396 27
40 % 206 399 38
30 % 206 399 57
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 217 49
95 % 177 268 51
90 % 177 268 54
70 % 177 268 66
50 % 177 268 91
40 % 177 268 112
30 % 177 268 124
Entity #23 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 259 42
95 % 177 259 57
90 % 177 259 61
70 % 177 259 73
50 % 177 259 96
40 % 177 259 119
30 % 177 259 130
Entity #3 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 269 31
95 % 177 270 42
90 % 177 270 47
70 % 177 270 57
50 % 205 390 32
40 % 205 393 43
30 % 205 393 61
Entity #5 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 233 45
95 % 160 233 63
90 % 160 233 67
70 % 160 233 79
50 % 166 304 81
40 % 166 304 100
30 % 166 304 113
Entity #6 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 262 39
95 % 177 270 43
90 % 177 270 48
70 % 177 270 58
50 % 205 392 30
40 % 205 395 41
30 % 205 395 60
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 269 34
95 % 177 269 47
90 % 177 269 50
70 % 177 269 61
50 % 206 396 29
40 % 206 396 42
30 % 206 398 59
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 274 26
95 % 185 280 34
90 % 185 280 39
70 % 185 280 50
50 % 185 280 86
40 % 185 280 105
30 % 209 334 90
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 273 27
95 % 178 274 39
90 % 178 274 43
70 % 178 274 54
50 % 205 338 68
40 % 205 341 78
30 % 205 341 91

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.