POP-OUT | CLOSE
 
Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
Sequence Clustering and Redundancy Reduction Results
1N33
Sequence Clusters for the Sequence Entities in PDB 1N33
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 268 21
95% 165 268 40
90% 166 272 39
70% 166 272 50
50% 207 382 35
40% 208 384 46
30% 231 441 47
Entity #11: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 113 138
95% 165 268 44
90% 165 268 46
70% 165 268 56
50% 204 376 40
40% 204 376 54
30% 226 432 56
Entity #12: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 163 265 27
95% 165 267 47
90% 165 267 49
70% 165 267 59
50% 210 382 34
40% 210 382 45
30% 210 387 65
Entity #13: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 268 25
95% 165 268 43
90% 165 268 45
70% 165 268 55
50% 204 376 41
40% 228 436 38
30% 228 436 51
Entity #14: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 237 35
95% 165 275 35
90% 165 275 37
70% 204 388 24
50% 204 388 33
40% 204 388 44
30% 204 388 68
Entity #15: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 269 22
95% 165 269 41
90% 165 269 43
70% 165 269 53
50% 204 378 38
40% 204 378 51
30% 226 434 54
Entity #16: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 267 26
95% 165 267 48
90% 165 267 50
70% 165 267 60
50% 165 267 93
40% 165 267 119
30% 165 267 140
Entity #17: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 271 20
95% 169 276 32
90% 169 276 34
70% 169 276 47
50% 211 389 32
40% 211 389 43
30% 211 389 67
Entity #18: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 263 28
95% 165 268 45
90% 165 268 47
70% 165 268 57
50% 165 268 91
40% 165 268 117
30% 204 376 76
Entity #19: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 92 220
95% 164 262 49
90% 165 266 51
70% 165 266 61
50% 165 266 94
40% 165 266 120
30% 165 266 142
Entity #2: Chains: Y - ANTICODON STEM-LOOP OF SER TRANSFER RNA rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 49 466
95% 157 232 61
90% 157 232 64
70% 157 232 78
50% 157 232 113
40% 157 232 138
30% 157 232 159
Entity #21: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 234 37
95% 157 234 59
90% 157 234 63
70% 157 234 77
50% 205 379 37
40% 205 379 49
30% 205 379 72
Entity #22: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 206 42
95% 165 267 46
90% 165 267 48
70% 165 267 58
50% 165 267 92
40% 165 267 118
30% 165 267 139
Entity #23: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 249 33
95% 165 249 52
90% 165 249 55
70% 165 249 66
50% 165 249 103
40% 165 249 130
30% 165 249 150
Entity #3: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 268 23
95% 165 269 38
90% 165 269 41
70% 165 269 51
50% 165 269 90
40% 204 376 53
30% 204 376 75
Entity #5: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 230 38
95% 156 230 62
90% 156 230 65
70% 156 230 79
50% 171 293 73
40% 171 293 98
30% 171 293 119
Entity #6: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 163 261 29
95% 165 269 39
90% 165 269 42
70% 165 269 52
50% 204 376 39
40% 204 377 52
30% 204 377 74
Entity #7: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 268 24
95% 165 268 42
90% 165 268 44
70% 165 268 54
50% 205 380 36
40% 205 380 48
30% 205 382 71
Entity #8: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 167 273 18
95% 173 279 29
90% 173 279 30
70% 173 279 44
50% 173 279 82
40% 173 279 106
30% 199 326 94
Entity #9: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 166 272 19
95% 166 273 36
90% 166 273 38
70% 166 273 49
50% 192 321 56
40% 192 322 73
30% 192 322 96
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.