1N33

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin


Sequence Similarity Clusters for the Entities in PDB 1N33

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 269 32
95 % 177 269 43
90 % 178 273 43
70 % 178 273 53
50 % 208 395 26
40 % 209 399 35
30 % 236 504 28
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 91 203
95 % 177 269 48
90 % 177 269 51
70 % 177 269 61
50 % 205 389 35
40 % 205 389 45
30 % 230 492 34
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 267 37
95 % 177 268 51
90 % 177 268 54
70 % 177 268 65
50 % 211 395 25
40 % 211 395 37
30 % 236 494 30
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 269 35
95 % 177 269 47
90 % 177 269 50
70 % 177 269 60
50 % 205 389 34
40 % 232 491 18
30 % 232 491 31
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 217 48
95 % 177 276 36
90 % 177 276 40
70 % 205 402 20
50 % 205 407 23
40 % 205 407 33
30 % 205 407 54
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 270 33
95 % 177 270 44
90 % 177 270 48
70 % 177 270 57
50 % 208 394 31
40 % 208 394 43
30 % 233 495 33
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 268 36
95 % 177 268 52
90 % 177 268 55
70 % 177 270 58
50 % 177 270 87
40 % 177 270 108
30 % 177 270 120
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 272 29
95 % 181 277 35
90 % 181 277 39
70 % 181 277 50
50 % 212 402 24
40 % 212 405 34
30 % 212 405 55
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 264 38
95 % 177 269 49
90 % 177 269 52
70 % 177 269 62
50 % 177 271 86
40 % 177 271 106
30 % 208 390 63
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 87 235
95 % 176 263 53
90 % 177 267 56
70 % 177 267 66
50 % 177 267 90
40 % 177 267 111
30 % 177 267 123
Entity #2 | Chains: Y
ANTICODON STEM-LOOP OF SER TRANSFER RNA rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 51 665
95 % 160 234 62
90 % 160 234 66
70 % 160 234 77
50 % 160 234 103
40 % 160 234 129
30 % 160 234 140
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 272 28
95 % 178 272 40
90 % 178 272 45
70 % 178 272 54
50 % 206 394 28
40 % 206 397 38
30 % 206 397 56
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 217 49
95 % 177 268 50
90 % 177 268 53
70 % 177 268 64
50 % 177 268 89
40 % 177 268 110
30 % 177 268 122
Entity #23 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 259 42
95 % 177 259 56
90 % 177 259 60
70 % 177 259 69
50 % 177 259 94
40 % 177 259 116
30 % 177 259 129
Entity #3 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 269 31
95 % 177 270 41
90 % 177 270 46
70 % 177 270 55
50 % 205 388 33
40 % 205 391 42
30 % 205 391 61
Entity #5 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 233 45
95 % 160 233 63
90 % 160 233 67
70 % 160 233 78
50 % 166 302 79
40 % 166 302 96
30 % 166 302 113
Entity #6 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 262 39
95 % 177 270 42
90 % 177 270 47
70 % 177 270 56
50 % 205 390 30
40 % 205 393 40
30 % 205 393 59
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 269 34
95 % 177 269 46
90 % 177 269 49
70 % 177 269 59
50 % 206 394 29
40 % 206 394 41
30 % 206 396 58
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 274 26
95 % 185 280 33
90 % 185 280 38
70 % 185 280 49
50 % 185 280 83
40 % 185 280 102
30 % 209 334 88
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 273 27
95 % 178 274 38
90 % 178 274 42
70 % 178 274 52
50 % 205 336 65
40 % 205 339 76
30 % 205 339 91

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.