1N33

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin


Sequence Similarity Clusters for the Entities in PDB 1N33

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 269 33
95 % 177 269 46
90 % 178 273 46
70 % 178 273 57
50 % 208 397 28
40 % 209 401 37
30 % 236 508 30
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 91 211
95 % 177 269 51
90 % 177 269 54
70 % 177 269 65
50 % 205 391 36
40 % 205 391 46
30 % 230 496 35
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 267 38
95 % 177 268 54
90 % 177 268 57
70 % 177 268 69
50 % 211 397 27
40 % 211 397 38
30 % 236 496 32
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 269 36
95 % 177 269 50
90 % 177 269 53
70 % 177 269 64
50 % 205 391 35
40 % 232 495 19
30 % 232 495 33
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 217 50
95 % 177 276 39
90 % 177 276 43
70 % 205 404 22
50 % 205 409 25
40 % 205 409 35
30 % 205 409 55
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 270 34
95 % 177 270 47
90 % 177 270 51
70 % 177 270 61
50 % 208 396 33
40 % 208 396 45
30 % 233 497 36
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 268 37
95 % 177 268 55
90 % 177 268 58
70 % 177 270 62
50 % 177 270 90
40 % 177 270 112
30 % 177 270 123
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 272 30
95 % 181 277 38
90 % 181 277 42
70 % 181 277 53
50 % 212 404 26
40 % 212 407 36
30 % 212 407 56
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 264 39
95 % 177 269 52
90 % 177 269 55
70 % 177 269 66
50 % 177 271 89
40 % 177 271 110
30 % 208 392 64
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 87 245
95 % 176 263 56
90 % 177 267 59
70 % 177 267 70
50 % 177 267 94
40 % 177 267 115
30 % 177 267 127
Entity #2 | Chains: Y
ANTICODON STEM-LOOP OF SER TRANSFER RNA rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 51 690
95 % 160 234 64
90 % 160 234 68
70 % 160 234 80
50 % 160 234 108
40 % 160 234 133
30 % 160 234 141
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 272 29
95 % 178 272 43
90 % 178 272 48
70 % 178 272 58
50 % 206 396 29
40 % 206 399 40
30 % 206 399 57
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 217 51
95 % 177 268 53
90 % 177 268 56
70 % 177 268 68
50 % 177 268 92
40 % 177 268 113
30 % 177 268 124
Entity #23 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 259 43
95 % 177 259 59
90 % 177 259 63
70 % 177 259 75
50 % 177 259 97
40 % 177 259 120
30 % 177 259 130
Entity #3 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 269 32
95 % 177 270 44
90 % 177 270 49
70 % 177 270 59
50 % 205 390 34
40 % 205 393 44
30 % 205 393 61
Entity #5 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 233 47
95 % 160 233 65
90 % 160 233 69
70 % 160 233 81
50 % 166 304 84
40 % 166 304 102
30 % 166 304 113
Entity #6 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 262 40
95 % 177 270 45
90 % 177 270 50
70 % 177 270 60
50 % 205 392 32
40 % 205 395 42
30 % 205 395 60
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 269 35
95 % 177 269 49
90 % 177 269 52
70 % 177 269 63
50 % 206 396 31
40 % 206 396 43
30 % 206 398 59
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 274 27
95 % 185 280 36
90 % 185 280 41
70 % 185 280 52
50 % 185 280 87
40 % 185 280 106
30 % 209 334 90
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 273 28
95 % 178 274 41
90 % 178 274 45
70 % 178 274 56
50 % 205 338 70
40 % 205 341 79
30 % 205 341 91

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.