Sequence Similarity Clusters for the Entities in PDB 1N33

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 255 30
95 % 173 255 40
90 % 174 259 42
70 % 174 259 51
50 % 204 359 29
40 % 205 361 39
30 % 226 438 32
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 91 197
95 % 173 255 44
90 % 173 255 49
70 % 173 255 58
50 % 201 353 36
40 % 201 353 45
30 % 221 429 39
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 253 35
95 % 173 254 48
90 % 173 254 53
70 % 173 254 63
50 % 207 359 28
40 % 207 359 38
30 % 227 432 35
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 255 33
95 % 173 255 43
90 % 173 255 48
70 % 173 255 57
50 % 201 353 35
40 % 223 434 20
30 % 223 435 33
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 207 46
95 % 173 262 35
90 % 173 262 40
70 % 201 364 22
50 % 201 365 27
40 % 201 365 37
30 % 201 365 56
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 256 31
95 % 173 256 41
90 % 173 256 46
70 % 173 256 55
50 % 204 358 32
40 % 204 358 43
30 % 224 433 38
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 254 34
95 % 173 254 49
90 % 173 254 54
70 % 173 255 60
50 % 173 255 86
40 % 173 255 107
30 % 173 255 120
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 258 27
95 % 177 263 34
90 % 177 263 39
70 % 177 263 49
50 % 208 366 26
40 % 208 367 36
30 % 208 367 55
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 250 36
95 % 173 255 45
90 % 173 255 50
70 % 173 255 59
50 % 173 255 85
40 % 173 256 106
30 % 204 356 61
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 87 224
95 % 172 249 51
90 % 173 253 55
70 % 173 253 64
50 % 173 253 88
40 % 173 253 109
30 % 173 253 123
Entity #2 | Chains: Y
ANTICODON STEM-LOOP OF SER TRANSFER RNA rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 51 608
95 % 156 220 63
90 % 156 220 68
70 % 156 220 78
50 % 156 220 108
40 % 156 220 131
30 % 156 220 142
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 258 26
95 % 174 258 37
90 % 174 258 43
70 % 174 258 52
50 % 202 356 31
40 % 202 356 41
30 % 202 356 58
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 154 203 47
95 % 173 254 47
90 % 173 254 52
70 % 173 254 62
50 % 173 254 87
40 % 173 254 108
30 % 173 254 121
Entity #23 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 245 38
95 % 173 245 53
90 % 173 245 58
70 % 173 245 68
50 % 173 245 93
40 % 173 245 117
30 % 173 245 131
Entity #3 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 255 28
95 % 173 256 38
90 % 173 256 44
70 % 173 256 53
50 % 201 352 34
40 % 201 353 44
30 % 201 353 60
Entity #5 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 219 44
95 % 156 219 64
90 % 156 219 69
70 % 156 219 79
50 % 162 273 78
40 % 162 273 100
30 % 162 273 112
Entity #6 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 248 37
95 % 173 256 39
90 % 173 256 45
70 % 173 256 54
50 % 201 353 33
40 % 201 354 42
30 % 201 354 59
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 255 32
95 % 173 255 42
90 % 173 255 47
70 % 173 255 56
50 % 202 357 30
40 % 202 357 40
30 % 202 359 57
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 260 24
95 % 181 266 33
90 % 181 266 36
70 % 181 266 45
50 % 181 266 83
40 % 181 266 102
30 % 205 312 77
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 259 25
95 % 174 260 36
90 % 174 260 41
70 % 174 260 50
50 % 201 312 52
40 % 201 313 64
30 % 201 313 85

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.