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Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
Sequence Clustering and Redundancy Reduction Results
1N33
Sequence Clusters for the Sequence Entities in PDB 1N33
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 195 22
95% 127 195 38
90% 128 199 35
70% 128 199 48
50% 149 275 35
40% 150 277 46
30% 169 327 43
Entity #11: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 89 144
95% 127 195 42
90% 127 195 44
70% 127 195 55
50% 146 269 40
40% 146 269 53
30% 164 318 49
Entity #12: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 193 28
95% 127 194 45
90% 127 194 47
70% 127 194 58
50% 152 275 34
40% 152 275 45
30% 152 280 65
Entity #13: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 195 26
95% 127 195 41
90% 127 195 43
70% 127 195 54
50% 146 269 41
40% 166 322 35
30% 166 322 44
Entity #14: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 164 35
95% 127 202 32
90% 127 202 33
70% 146 281 23
50% 146 281 33
40% 146 281 44
30% 146 281 68
Entity #15: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 196 23
95% 127 196 39
90% 127 196 41
70% 127 196 52
50% 149 274 38
40% 149 274 50
30% 167 323 47
Entity #16: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 194 27
95% 127 194 46
90% 127 194 48
70% 127 194 59
50% 127 194 92
40% 127 194 115
30% 127 194 137
Entity #17: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 198 21
95% 131 203 30
90% 131 203 31
70% 131 203 43
50% 153 282 32
40% 153 282 42
30% 153 282 67
Entity #18: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 190 29
95% 127 195 43
90% 127 195 45
70% 127 195 56
50% 127 195 89
40% 127 195 113
30% 149 272 76
Entity #19: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 79 223
95% 126 189 48
90% 127 193 50
70% 127 193 61
50% 127 193 95
40% 127 193 120
30% 127 193 139
Entity #2: Chains: Y - ANTICODON STEM-LOOP OF SER TRANSFER RNA rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 49 494
95% 118 172 58
90% 118 172 62
70% 118 172 76
50% 118 172 111
40% 118 172 137
30% 118 172 156
Entity #21: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 174 36
95% 118 174 57
90% 118 174 61
70% 118 174 75
50% 147 272 37
40% 147 272 49
30% 147 272 72
Entity #22: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 146 42
95% 127 194 44
90% 127 194 46
70% 127 194 57
50% 127 194 91
40% 127 194 114
30% 127 194 136
Entity #23: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 185 32
95% 127 185 51
90% 127 185 54
70% 127 185 65
50% 127 185 101
40% 127 185 127
30% 127 185 147
Entity #3: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 195 24
95% 127 196 36
90% 127 196 39
70% 127 196 50
50% 127 196 87
40% 146 269 52
30% 146 269 75
Entity #5: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 171 37
95% 118 171 59
90% 118 171 63
70% 118 171 77
50% 123 210 73
40% 123 210 97
30% 123 210 120
Entity #6: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 188 30
95% 127 196 37
90% 127 196 40
70% 127 196 51
50% 146 269 39
40% 146 270 51
30% 146 270 73
Entity #7: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 195 25
95% 127 195 40
90% 127 195 42
70% 127 195 53
50% 147 273 36
40% 147 273 48
30% 147 275 70
Entity #8: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 200 17
95% 135 206 29
90% 135 206 30
70% 135 206 40
50% 135 206 80
40% 135 206 105
30% 151 243 90
Entity #9: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 199 20
95% 128 200 33
90% 128 200 34
70% 128 200 47
50% 147 241 54
40% 147 242 70
30% 147 242 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.