Sequence Similarity Clusters for the Entities in PDB 1N33

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 239 19
95 % 160 239 31
90 % 161 243 30
70 % 161 243 41
50 % 184 330 31
40 % 185 332 41
30 % 204 401 37
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 90 190
95 % 160 239 35
90 % 160 239 40
70 % 160 239 49
50 % 181 324 39
40 % 181 324 49
30 % 199 392 47
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 237 25
95 % 160 238 38
90 % 160 238 43
70 % 160 238 53
50 % 187 330 30
40 % 187 330 40
30 % 205 396 41
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 239 23
95 % 160 239 34
90 % 160 239 39
70 % 160 239 48
50 % 181 324 38
40 % 201 397 27
30 % 201 398 39
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 194 42
95 % 160 246 22
90 % 160 246 27
70 % 181 335 23
50 % 181 336 29
40 % 181 336 39
30 % 181 336 56
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 240 20
95 % 160 240 32
90 % 160 240 37
70 % 160 240 46
50 % 184 329 35
40 % 184 329 46
30 % 202 397 46
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 238 24
95 % 160 238 39
90 % 160 238 44
70 % 160 239 51
50 % 160 239 82
40 % 160 239 107
30 % 160 239 123
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 242 16
95 % 164 247 21
90 % 164 247 26
70 % 164 247 37
50 % 188 337 27
40 % 188 338 38
30 % 188 338 54
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 234 26
95 % 160 239 36
90 % 160 239 41
70 % 160 239 50
50 % 160 239 81
40 % 160 240 106
30 % 184 327 64
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 84 225
95 % 159 233 40
90 % 160 237 45
70 % 160 237 54
50 % 160 237 87
40 % 160 237 113
30 % 160 237 128
Entity #2 | Chains: Y
ANTICODON STEM-LOOP OF SER TRANSFER RNA rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 49 564
95 % 144 205 63
90 % 144 205 66
70 % 144 205 75
50 % 144 205 109
40 % 144 205 129
30 % 144 205 145
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 242 15
95 % 161 242 26
90 % 161 242 31
70 % 161 242 42
50 % 182 327 34
40 % 182 327 44
30 % 182 327 60
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 188 48
95 % 160 238 37
90 % 160 238 42
70 % 160 238 52
50 % 160 238 83
40 % 160 238 109
30 % 160 238 125
Entity #23 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 229 39
95 % 160 229 54
90 % 160 229 58
70 % 160 229 69
50 % 160 229 96
40 % 160 229 118
30 % 160 229 132
Entity #3 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 239 17
95 % 160 240 27
90 % 160 240 33
70 % 160 240 43
50 % 181 323 37
40 % 181 324 47
30 % 181 324 63
Entity #5 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 144 204 43
95 % 144 204 64
90 % 144 204 67
70 % 144 204 76
50 % 150 252 68
40 % 150 252 93
30 % 150 252 110
Entity #6 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 232 27
95 % 160 240 28
90 % 160 240 34
70 % 160 240 44
50 % 181 324 36
40 % 181 325 45
30 % 181 325 62
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 239 22
95 % 160 239 33
90 % 160 239 38
70 % 160 239 47
50 % 182 328 33
40 % 182 328 43
30 % 182 330 59
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 244 13
95 % 168 250 20
90 % 168 250 25
70 % 168 250 35
50 % 168 250 70
40 % 168 250 94
30 % 185 289 80
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 243 14
95 % 161 244 25
90 % 161 244 29
70 % 161 244 40
50 % 181 289 50
40 % 181 290 62
30 % 181 290 83

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.