1N33

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin


Sequence Similarity Clusters for the Entities in PDB 1N33

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 271 32
95 % 179 271 45
90 % 180 275 47
70 % 180 275 57
50 % 210 421 27
40 % 211 427 37
30 % 240 542 30
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 91 220
95 % 179 271 50
90 % 179 271 55
70 % 179 271 65
50 % 207 411 35
40 % 207 411 48
30 % 234 526 34
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 269 39
95 % 179 270 53
90 % 179 270 58
70 % 179 270 68
50 % 213 421 26
40 % 213 421 38
30 % 240 528 32
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 271 35
95 % 179 271 49
90 % 179 271 54
70 % 179 271 64
50 % 207 415 32
40 % 236 537 19
30 % 236 537 31
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 217 51
95 % 179 278 39
90 % 179 278 44
70 % 207 422 19
50 % 207 432 24
40 % 207 432 35
30 % 207 432 55
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 272 33
95 % 179 272 46
90 % 179 272 51
70 % 179 272 62
50 % 210 419 31
40 % 210 419 43
30 % 237 527 36
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 270 36
95 % 179 270 54
90 % 179 270 59
70 % 179 279 54
50 % 179 279 90
40 % 179 279 113
30 % 179 279 123
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 274 30
95 % 183 279 38
90 % 183 279 43
70 % 183 279 53
50 % 214 428 25
40 % 214 433 34
30 % 214 433 54
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 266 41
95 % 179 271 51
90 % 179 271 56
70 % 179 271 66
50 % 179 278 91
40 % 179 278 114
30 % 210 413 63
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 87 258
95 % 178 265 56
90 % 179 269 60
70 % 179 269 69
50 % 179 269 94
40 % 179 269 117
30 % 179 269 128
Entity #2 | Chains: Y
ANTICODON STEM-LOOP OF SER TRANSFER RNA rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 51 719
95 % 162 236 65
90 % 162 236 69
70 % 162 236 81
50 % 162 236 111
40 % 162 236 135
30 % 162 236 144
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 274 29
95 % 180 274 42
90 % 180 274 48
70 % 180 274 58
50 % 208 421 28
40 % 208 424 40
30 % 208 424 57
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 219 50
95 % 179 270 52
90 % 179 270 57
70 % 179 270 67
50 % 179 270 93
40 % 179 270 116
30 % 179 270 127
Entity #23 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 261 43
95 % 179 261 59
90 % 179 261 63
70 % 179 261 74
50 % 179 261 98
40 % 179 261 121
30 % 179 261 133
Entity #3 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 271 31
95 % 179 272 43
90 % 179 272 49
70 % 179 272 59
50 % 207 409 36
40 % 207 414 45
30 % 207 414 62
Entity #5 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 235 48
95 % 162 235 66
90 % 162 235 70
70 % 162 235 82
50 % 168 309 84
40 % 168 309 103
30 % 168 309 116
Entity #6 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 264 42
95 % 179 272 44
90 % 179 272 50
70 % 179 272 60
50 % 207 416 29
40 % 207 421 41
30 % 207 421 58
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 271 34
95 % 179 271 48
90 % 179 271 53
70 % 179 271 63
50 % 208 417 30
40 % 208 417 42
30 % 208 419 60
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 181 276 27
95 % 187 282 37
90 % 187 282 42
70 % 187 282 51
50 % 187 282 88
40 % 187 282 110
30 % 211 355 95
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 275 28
95 % 180 276 41
90 % 180 276 46
70 % 180 276 56
50 % 207 356 66
40 % 207 361 84
30 % 207 361 96

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.