1N33

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin


Sequence Similarity Clusters for the Entities in PDB 1N33

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 269 34
95 % 177 269 46
90 % 178 273 46
70 % 178 273 57
50 % 208 401 28
40 % 209 405 38
30 % 236 514 30
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 91 212
95 % 177 269 51
90 % 177 269 55
70 % 177 269 65
50 % 205 395 35
40 % 205 395 47
30 % 230 501 35
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 267 40
95 % 177 268 54
90 % 177 268 58
70 % 177 268 69
50 % 211 402 26
40 % 211 402 37
30 % 236 502 32
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 269 37
95 % 177 269 50
90 % 177 269 54
70 % 177 269 64
50 % 205 395 34
40 % 232 501 19
30 % 232 501 33
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 217 50
95 % 177 276 40
90 % 177 276 44
70 % 205 406 22
50 % 205 412 25
40 % 205 412 35
30 % 205 412 55
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 270 35
95 % 177 270 47
90 % 177 270 52
70 % 177 270 62
50 % 208 400 33
40 % 208 400 45
30 % 233 502 36
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 268 38
95 % 177 268 55
90 % 177 268 59
70 % 177 271 61
50 % 177 271 90
40 % 177 271 111
30 % 177 271 124
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 272 30
95 % 181 277 39
90 % 181 277 43
70 % 181 277 55
50 % 212 408 27
40 % 212 411 36
30 % 212 411 56
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 264 41
95 % 177 269 52
90 % 177 269 56
70 % 177 269 66
50 % 177 272 89
40 % 177 272 110
30 % 208 396 64
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 87 247
95 % 176 263 57
90 % 177 267 60
70 % 177 267 70
50 % 177 267 94
40 % 177 267 115
30 % 177 267 127
Entity #2 | Chains: Y
ANTICODON STEM-LOOP OF SER TRANSFER RNA rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 51 692
95 % 160 234 65
90 % 160 234 70
70 % 160 234 81
50 % 160 234 108
40 % 160 234 133
30 % 160 234 142
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 272 29
95 % 178 272 43
90 % 178 272 48
70 % 178 272 58
50 % 206 400 30
40 % 206 403 41
30 % 206 403 58
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 217 51
95 % 177 268 53
90 % 177 268 57
70 % 177 268 68
50 % 177 268 93
40 % 177 268 114
30 % 177 268 126
Entity #23 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 259 43
95 % 177 259 59
90 % 177 259 63
70 % 177 259 75
50 % 177 259 98
40 % 177 259 120
30 % 177 259 131
Entity #3 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 269 33
95 % 177 270 44
90 % 177 270 50
70 % 177 270 59
50 % 205 392 37
40 % 205 395 46
30 % 205 395 62
Entity #5 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 233 48
95 % 160 233 66
90 % 160 233 71
70 % 160 233 82
50 % 166 306 83
40 % 166 306 102
30 % 166 306 114
Entity #6 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 262 42
95 % 177 270 45
90 % 177 270 51
70 % 177 270 60
50 % 205 396 32
40 % 205 399 43
30 % 205 399 61
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 269 36
95 % 177 269 49
90 % 177 269 53
70 % 177 269 63
50 % 206 400 31
40 % 206 400 44
30 % 206 402 59
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 274 27
95 % 185 280 37
90 % 185 280 41
70 % 185 280 52
50 % 185 280 87
40 % 185 280 106
30 % 209 336 93
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 273 28
95 % 178 274 41
90 % 178 274 45
70 % 178 274 56
50 % 205 339 71
40 % 205 342 84
30 % 205 342 97

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.