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An Information Portal to 105212 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin
Sequence Clustering and Redundancy Reduction Results
1N32
Sequence Clusters for the Sequence Entities in PDB 1N32
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 268 21
95% 95 268 40
90% 95 272 39
70% 95 272 50
50% 133 384 35
40% 134 386 47
30% 163 459 43
Entity #11: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 113 155
95% 94 268 44
90% 94 268 46
70% 94 268 56
50% 130 378 40
40% 130 378 54
30% 158 450 50
Entity #12: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 265 27
95% 94 267 47
90% 94 267 49
70% 94 267 59
50% 136 384 34
40% 136 384 46
30% 136 389 65
Entity #13: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 268 25
95% 94 268 43
90% 94 268 45
70% 94 268 55
50% 130 378 41
40% 160 454 34
30% 160 454 44
Entity #14: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 237 35
95% 94 275 35
90% 94 275 37
70% 130 390 24
50% 130 390 33
40% 130 390 45
30% 130 390 68
Entity #15: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 269 22
95% 94 269 41
90% 94 269 43
70% 94 269 53
50% 130 380 38
40% 130 380 51
30% 158 452 47
Entity #16: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 267 26
95% 94 267 48
90% 94 267 50
70% 94 267 60
50% 94 267 94
40% 94 267 119
30% 94 267 141
Entity #17: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 271 20
95% 98 276 32
90% 98 276 34
70% 98 276 47
50% 137 391 32
40% 137 391 43
30% 137 391 67
Entity #18: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 263 28
95% 94 268 45
90% 94 268 47
70% 94 268 57
50% 94 268 92
40% 94 268 117
30% 130 378 76
Entity #19: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 92 221
95% 94 262 49
90% 94 266 51
70% 94 266 61
50% 94 266 95
40% 94 266 120
30% 94 266 142
Entity #2: Chains: Y - ANTICODON STEM-LOOP OF LEU-2 TRANSFER RNA rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 49 486
95% 89 232 61
90% 89 232 64
70% 89 232 78
50% 89 232 116
40% 89 232 139
30% 89 232 161
Entity #21: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 234 37
95% 89 234 59
90% 89 234 63
70% 89 234 77
50% 131 381 37
40% 131 381 49
30% 131 381 72
Entity #22: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 206 42
95% 94 267 46
90% 94 267 48
70% 94 267 58
50% 94 267 93
40% 94 267 118
30% 94 267 140
Entity #23: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 249 34
95% 94 249 53
90% 94 249 55
70% 94 249 68
50% 94 249 105
40% 94 249 132
30% 94 249 151
Entity #3: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 268 23
95% 94 269 38
90% 94 269 41
70% 94 269 51
50% 94 269 91
40% 130 378 53
30% 130 378 75
Entity #5: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 230 38
95% 88 230 63
90% 88 230 66
70% 88 230 80
50% 100 293 74
40% 100 293 99
30% 100 293 119
Entity #6: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 261 29
95% 94 269 39
90% 94 269 42
70% 94 269 52
50% 130 378 39
40% 130 379 52
30% 130 379 74
Entity #7: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 268 24
95% 94 268 42
90% 94 268 44
70% 94 268 54
50% 131 382 36
40% 131 382 48
30% 131 384 71
Entity #8: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 273 18
95% 102 279 29
90% 102 279 30
70% 102 279 44
50% 102 279 86
40% 102 279 108
30% 128 328 94
Entity #9: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 272 19
95% 95 273 36
90% 95 273 38
70% 95 273 49
50% 120 323 56
40% 120 324 74
30% 120 324 96
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.