1N32

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin


Sequence Similarity Clusters for the Entities in PDB 1N32

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 256 31
95 % 116 256 42
90 % 116 260 43
70 % 116 260 52
50 % 143 362 29
40 % 144 364 39
30 % 162 443 33
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 91 198
95 % 115 256 46
90 % 115 256 51
70 % 115 256 60
50 % 140 356 36
40 % 140 356 46
30 % 156 433 40
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 254 36
95 % 115 255 49
90 % 115 255 54
70 % 115 255 64
50 % 146 362 28
40 % 146 362 38
30 % 162 436 36
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 256 34
95 % 115 256 45
90 % 115 256 50
70 % 115 256 59
50 % 140 356 35
40 % 158 438 20
30 % 158 439 34
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 208 46
95 % 115 263 36
90 % 115 263 41
70 % 140 367 22
50 % 140 368 27
40 % 140 368 37
30 % 140 368 57
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 257 32
95 % 115 257 43
90 % 115 257 48
70 % 115 257 57
50 % 143 361 32
40 % 143 361 43
30 % 159 437 39
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 255 35
95 % 115 255 50
90 % 115 255 55
70 % 115 256 62
50 % 115 256 88
40 % 115 256 108
30 % 115 256 120
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 259 29
95 % 119 264 35
90 % 119 264 40
70 % 119 264 50
50 % 147 369 26
40 % 147 370 36
30 % 147 370 56
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 251 37
95 % 115 256 47
90 % 115 256 52
70 % 115 256 61
50 % 115 256 87
40 % 115 257 107
30 % 143 359 63
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 87 225
95 % 115 250 51
90 % 115 254 56
70 % 115 254 66
50 % 115 254 90
40 % 115 254 111
30 % 115 254 123
Entity #2 | Chains: Y
ANTICODON STEM-LOOP OF LEU-2 TRANSFER RNA rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 51 616
95 % 104 221 64
90 % 104 221 69
70 % 104 221 79
50 % 104 221 111
40 % 104 221 132
30 % 104 221 143
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 259 27
95 % 116 259 38
90 % 116 259 44
70 % 116 259 53
50 % 141 359 31
40 % 141 359 41
30 % 141 359 59
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 204 48
95 % 115 255 48
90 % 115 255 53
70 % 115 255 63
50 % 115 255 89
40 % 115 255 110
30 % 115 255 122
Entity #23 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 246 39
95 % 115 246 54
90 % 115 246 59
70 % 115 246 69
50 % 115 246 95
40 % 115 246 118
30 % 115 246 131
Entity #3 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 256 30
95 % 115 257 39
90 % 115 257 45
70 % 115 257 54
50 % 140 355 34
40 % 140 356 44
30 % 140 356 62
Entity #5 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 220 45
95 % 103 220 65
90 % 103 220 70
70 % 103 220 80
50 % 107 276 78
40 % 107 276 100
30 % 107 276 112
Entity #6 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 249 38
95 % 115 257 40
90 % 115 257 46
70 % 115 257 55
50 % 140 356 33
40 % 140 357 42
30 % 140 357 61
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 256 33
95 % 115 256 44
90 % 115 256 49
70 % 115 256 58
50 % 141 360 30
40 % 141 360 40
30 % 141 362 58
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 261 25
95 % 123 267 34
90 % 123 267 37
70 % 123 267 46
50 % 123 267 84
40 % 123 267 103
30 % 146 313 77
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 260 26
95 % 116 261 37
90 % 116 261 42
70 % 116 261 51
50 % 141 313 54
40 % 141 314 68
30 % 141 314 89

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.