POP-OUT | CLOSE
 
Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin
Sequence Clustering and Redundancy Reduction Results
1N32
Sequence Clusters for the Sequence Entities in PDB 1N32
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 255 23
95% 87 255 41
90% 87 259 40
70% 87 259 52
50% 123 369 36
40% 124 371 49
30% 127 408 50
Entity #11: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 113 134
95% 86 255 45
90% 86 255 48
70% 86 255 60
50% 120 363 41
40% 120 363 56
30% 122 399 59
Entity #12: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 252 29
95% 86 254 48
90% 86 254 51
70% 86 254 63
50% 126 369 34
40% 126 369 48
30% 126 374 67
Entity #13: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 255 27
95% 86 255 44
90% 86 255 47
70% 86 255 59
50% 120 363 42
40% 124 403 39
30% 124 403 53
Entity #14: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 224 37
95% 86 262 36
90% 86 262 38
70% 120 375 24
50% 120 375 33
40% 120 375 47
30% 120 375 71
Entity #15: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 256 24
95% 86 256 42
90% 86 256 45
70% 86 256 57
50% 120 365 39
40% 120 365 53
30% 122 401 57
Entity #16: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 254 28
95% 86 254 49
90% 86 254 52
70% 86 254 64
50% 86 254 99
40% 86 254 124
30% 86 254 144
Entity #17: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 258 21
95% 90 263 35
90% 90 263 37
70% 90 263 48
50% 127 376 32
40% 127 376 45
30% 127 376 69
Entity #18: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 250 31
95% 86 255 46
90% 86 255 49
70% 86 255 61
50% 86 255 97
40% 86 255 122
30% 120 363 78
Entity #19: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 92 219
95% 86 249 51
90% 86 253 53
70% 86 253 65
50% 86 253 100
40% 86 253 126
30% 86 253 146
Entity #2: Chains: Y - ANTICODON STEM-LOOP OF LEU-2 TRANSFER RNA rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 49 463
95% 81 221 64
90% 81 221 68
70% 81 221 81
50% 81 221 116
40% 81 221 144
30% 81 221 166
Entity #21: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 223 38
95% 81 223 63
90% 81 223 67
70% 81 223 80
50% 121 366 38
40% 121 366 52
30% 121 366 75
Entity #22: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 193 43
95% 86 254 47
90% 86 254 50
70% 86 254 62
50% 86 254 98
40% 86 254 123
30% 86 254 143
Entity #23: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 238 34
95% 86 238 55
90% 86 238 59
70% 86 238 71
50% 86 238 110
40% 86 238 133
30% 86 238 153
Entity #3: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 255 25
95% 86 256 39
90% 86 256 43
70% 86 256 55
50% 86 256 96
40% 120 363 55
30% 120 363 77
Entity #5: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 219 39
95% 80 219 66
90% 80 219 70
70% 80 219 83
50% 92 282 81
40% 92 282 101
30% 92 282 123
Entity #6: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 248 32
95% 86 256 40
90% 86 256 44
70% 86 256 56
50% 120 363 40
40% 120 364 54
30% 120 364 76
Entity #7: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 255 26
95% 86 255 43
90% 86 255 46
70% 86 255 58
50% 121 367 37
40% 121 367 51
30% 121 369 72
Entity #8: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 260 18
95% 94 266 34
90% 94 266 36
70% 94 266 47
50% 94 266 88
40% 94 266 112
30% 118 313 95
Entity #9: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 259 20
95% 87 260 37
90% 87 260 39
70% 87 260 51
50% 110 308 57
40% 110 309 74
30% 110 309 97
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.