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Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin
Sequence Clustering and Redundancy Reduction Results
1N32
Sequence Clusters for the Sequence Entities in PDB 1N32
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 219 31
95% 92 219 44
90% 92 223 45
70% 92 223 56
50% 112 306 35
40% 113 308 43
30% 128 373 37
Entity #11: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 89 180
95% 91 219 48
90% 91 219 52
70% 91 219 63
50% 109 300 43
40% 109 300 52
30% 123 364 46
Entity #12: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 217 36
95% 91 218 51
90% 91 218 55
70% 91 218 67
50% 115 306 31
40% 115 306 42
30% 129 368 40
Entity #13: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 219 34
95% 91 219 47
90% 91 219 51
70% 91 219 62
50% 109 300 42
40% 125 369 30
30% 125 370 38
Entity #14: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 182 46
95% 91 226 39
90% 91 226 43
70% 109 311 22
50% 109 312 30
40% 109 312 41
30% 109 312 57
Entity #15: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 220 32
95% 91 220 45
90% 91 220 49
70% 91 220 60
50% 112 305 39
40% 112 305 50
30% 126 369 44
Entity #16: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 218 35
95% 91 218 52
90% 91 218 56
70% 91 219 65
50% 91 219 92
40% 91 219 114
30% 91 219 128
Entity #17: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 222 29
95% 95 227 36
90% 95 227 40
70% 95 227 52
50% 116 313 29
40% 116 314 39
30% 116 314 54
Entity #18: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 214 37
95% 91 219 49
90% 91 219 53
70% 91 219 64
50% 91 219 91
40% 91 220 113
30% 112 303 70
Entity #19: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 80 226
95% 91 213 56
90% 91 217 58
70% 91 217 69
50% 91 217 94
40% 91 217 116
30% 91 217 130
Entity #2: Chains: Y - ANTICODON STEM-LOOP OF LEU-2 TRANSFER RNA rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 49 530
95% 86 194 64
90% 86 194 66
70% 86 194 79
50% 86 194 113
40% 86 194 131
30% 86 194 150
Entity #21: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 222 28
95% 92 222 41
90% 92 222 46
70% 92 222 57
50% 110 303 38
40% 110 303 48
30% 110 303 67
Entity #22: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 169 49
95% 91 218 50
90% 91 218 54
70% 91 218 66
50% 91 218 93
40% 91 218 115
30% 91 218 129
Entity #23: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 209 40
95% 91 209 59
90% 91 209 62
70% 91 209 73
50% 91 209 100
40% 91 209 123
30% 91 209 135
Entity #3: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 219 30
95% 91 220 42
90% 91 220 47
70% 91 220 58
50% 109 299 41
40% 109 300 51
30% 109 300 69
Entity #5: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 193 45
95% 85 193 65
90% 85 193 67
70% 85 193 80
50% 89 237 77
40% 89 237 102
30% 89 237 121
Entity #6: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 212 38
95% 91 220 43
90% 91 220 48
70% 91 220 59
50% 109 300 40
40% 109 301 49
30% 109 301 68
Entity #7: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 219 33
95% 91 219 46
90% 91 219 50
70% 91 219 61
50% 110 304 37
40% 110 304 47
30% 110 306 63
Entity #8: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 224 25
95% 99 230 24
90% 99 230 29
70% 99 230 41
50% 99 230 83
40% 99 230 108
30% 115 269 80
Entity #9: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 223 27
95% 92 224 40
90% 92 224 44
70% 92 224 55
50% 110 267 51
40% 110 268 64
30% 110 268 83
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.