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Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin
Sequence Clustering and Redundancy Reduction Results
1N32
Sequence Clusters for the Sequence Entities in PDB 1N32
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 206 19
95% 82 206 38
90% 82 210 36
70% 82 210 45
50% 101 290 36
40% 102 292 46
30% 117 347 44
Entity #11: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 90 160
95% 81 206 42
90% 81 206 44
70% 81 206 53
50% 98 284 42
40% 98 284 52
30% 112 338 49
Entity #12: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 204 25
95% 81 205 45
90% 81 205 47
70% 81 205 57
50% 104 290 35
40% 104 290 45
30% 118 342 46
Entity #13: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 206 23
95% 81 206 41
90% 81 206 43
70% 81 206 52
50% 98 284 41
40% 114 343 34
30% 114 344 45
Entity #14: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 172 33
95% 81 213 31
90% 81 213 34
70% 98 295 24
50% 98 296 34
40% 98 296 44
30% 98 296 67
Entity #15: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 207 20
95% 81 207 39
90% 81 207 41
70% 81 207 50
50% 101 289 39
40% 101 289 49
30% 115 343 48
Entity #16: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 205 24
95% 81 205 46
90% 81 205 48
70% 81 206 55
50% 81 206 85
40% 81 206 110
30% 81 206 129
Entity #17: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 209 18
95% 85 214 29
90% 85 214 32
70% 85 214 42
50% 105 297 33
40% 105 298 43
30% 105 298 65
Entity #18: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 201 29
95% 81 206 43
90% 81 206 45
70% 81 206 54
50% 81 206 84
40% 81 207 109
30% 101 287 74
Entity #19: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 80 223
95% 81 200 47
90% 81 204 49
70% 81 204 58
50% 81 204 87
40% 81 204 112
30% 81 204 131
Entity #2: Chains: Y - ANTICODON STEM-LOOP OF LEU-2 TRANSFER RNA rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 49 515
95% 76 180 55
90% 76 180 57
70% 76 180 72
50% 76 180 119
40% 76 180 143
30% 76 180 159
Entity #21: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 209 17
95% 82 209 33
90% 82 209 37
70% 82 209 46
50% 99 287 38
40% 99 287 48
30% 99 287 71
Entity #22: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 156 52
95% 81 205 44
90% 81 205 46
70% 81 205 56
50% 81 205 86
40% 81 205 111
30% 81 205 130
Entity #23: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 196 32
95% 81 196 51
90% 81 196 53
70% 81 196 64
50% 81 196 97
40% 81 196 120
30% 81 196 143
Entity #3: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 206 21
95% 81 207 35
90% 81 207 38
70% 81 207 47
50% 98 283 43
40% 98 284 51
30% 98 284 73
Entity #5: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 179 36
95% 75 179 56
90% 75 179 59
70% 75 179 73
50% 78 220 77
40% 78 220 100
30% 78 220 120
Entity #6: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 199 30
95% 81 207 37
90% 81 207 40
70% 81 207 49
50% 98 284 40
40% 98 285 50
30% 98 285 72
Entity #7: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 206 22
95% 81 206 40
90% 81 206 42
70% 81 206 51
50% 99 288 37
40% 99 288 47
30% 99 290 69
Entity #8: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 211 15
95% 89 217 28
90% 89 217 31
70% 89 217 41
50% 89 217 78
40% 89 217 102
30% 105 256 85
Entity #9: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 210 16
95% 82 211 32
90% 82 211 35
70% 82 211 44
50% 100 254 51
40% 100 255 67
30% 100 255 88
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.