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An Information Portal to 110790 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin
Sequence Clustering and Redundancy Reduction Results
1N32
Sequence Clusters for the Sequence Entities in PDB 1N32
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 220 31
95% 92 220 44
90% 92 224 45
70% 92 224 56
50% 111 306 34
40% 112 308 44
30% 127 365 40
Entity #11: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 90 167
95% 91 220 48
90% 91 220 52
70% 91 220 63
50% 108 300 43
40% 108 300 52
30% 122 356 48
Entity #12: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 218 36
95% 91 219 51
90% 91 219 55
70% 91 219 67
50% 114 306 33
40% 114 306 43
30% 128 360 42
Entity #13: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 220 34
95% 91 220 47
90% 91 220 51
70% 91 220 62
50% 108 300 42
40% 124 361 30
30% 124 362 41
Entity #14: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 183 46
95% 91 227 38
90% 91 227 42
70% 108 311 23
50% 108 312 32
40% 108 312 42
30% 108 312 57
Entity #15: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 221 32
95% 91 221 45
90% 91 221 49
70% 91 221 60
50% 111 305 38
40% 111 305 50
30% 125 361 47
Entity #16: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 219 35
95% 91 219 52
90% 91 219 56
70% 91 220 65
50% 91 220 92
40% 91 220 113
30% 91 220 126
Entity #17: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 223 29
95% 95 228 26
90% 95 228 31
70% 95 228 43
50% 115 313 29
40% 115 314 40
30% 115 314 55
Entity #18: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 215 37
95% 91 220 49
90% 91 220 53
70% 91 220 64
50% 91 220 91
40% 91 221 112
30% 111 303 70
Entity #19: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 80 224
95% 91 214 56
90% 91 218 58
70% 91 218 69
50% 91 218 94
40% 91 218 116
30% 91 218 128
Entity #2: Chains: Y - ANTICODON STEM-LOOP OF LEU-2 TRANSFER RNA rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 49 525
95% 86 194 64
90% 86 194 66
70% 86 194 79
50% 86 194 111
40% 86 194 130
30% 86 194 150
Entity #21: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 223 27
95% 92 223 41
90% 92 223 46
70% 92 223 57
50% 109 303 37
40% 109 303 48
30% 109 303 67
Entity #22: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 170 49
95% 91 219 50
90% 91 219 54
70% 91 219 66
50% 91 219 93
40% 91 219 114
30% 91 219 127
Entity #23: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 210 40
95% 91 210 59
90% 91 210 62
70% 91 210 73
50% 91 210 98
40% 91 210 120
30% 91 210 133
Entity #3: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 220 30
95% 91 221 42
90% 91 221 47
70% 91 221 58
50% 108 299 41
40% 108 300 51
30% 108 300 69
Entity #5: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 193 45
95% 85 193 65
90% 85 193 67
70% 85 193 80
50% 88 236 78
40% 88 236 99
30% 88 236 119
Entity #6: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 213 38
95% 91 221 43
90% 91 221 48
70% 91 221 59
50% 108 300 39
40% 108 301 49
30% 108 301 68
Entity #7: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 220 33
95% 91 220 46
90% 91 220 50
70% 91 220 61
50% 109 304 36
40% 109 304 47
30% 109 306 65
Entity #8: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 225 24
95% 99 231 24
90% 99 231 29
70% 99 231 41
50% 99 231 83
40% 99 231 105
30% 115 270 79
Entity #9: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 224 26
95% 92 225 40
90% 92 225 44
70% 92 225 55
50% 110 268 51
40% 110 269 62
30% 110 269 81
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.