1N32

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin


Sequence Similarity Clusters for the Entities in PDB 1N32

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 269 32
95 % 117 269 43
90 % 117 273 42
70 % 117 273 52
50 % 144 394 26
40 % 145 398 36
30 % 163 500 28
Entity #11 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 91 202
95 % 116 269 48
90 % 116 269 51
70 % 116 269 61
50 % 141 388 35
40 % 141 388 45
30 % 157 488 33
Entity #12 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 267 37
95 % 116 268 51
90 % 116 268 54
70 % 116 268 65
50 % 147 394 25
40 % 147 394 37
30 % 163 490 29
Entity #13 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 269 35
95 % 116 269 47
90 % 116 269 50
70 % 116 269 60
50 % 141 388 34
40 % 159 487 18
30 % 159 487 31
Entity #14 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 217 48
95 % 116 276 36
90 % 116 276 40
70 % 141 401 20
50 % 141 403 23
40 % 141 403 34
30 % 141 403 55
Entity #15 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 270 33
95 % 116 270 44
90 % 116 270 48
70 % 116 270 57
50 % 144 393 32
40 % 144 393 44
30 % 160 491 32
Entity #16 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 268 36
95 % 116 268 52
90 % 116 268 55
70 % 116 270 58
50 % 116 270 87
40 % 116 270 108
30 % 116 270 120
Entity #17 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 272 28
95 % 120 277 35
90 % 120 277 39
70 % 120 277 50
50 % 148 401 24
40 % 148 404 33
30 % 148 404 54
Entity #18 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 264 38
95 % 116 269 49
90 % 116 269 52
70 % 116 269 62
50 % 116 271 86
40 % 116 271 106
30 % 144 389 63
Entity #19 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 87 234
95 % 116 263 53
90 % 116 267 56
70 % 116 267 66
50 % 116 267 90
40 % 116 267 111
30 % 116 267 123
Entity #2 | Chains: Y
ANTICODON STEM-LOOP OF LEU-2 TRANSFER RNA rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 51 647
95 % 105 234 62
90 % 105 234 66
70 % 105 234 77
50 % 105 234 103
40 % 105 234 129
30 % 105 234 140
Entity #21 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 272 27
95 % 117 272 40
90 % 117 272 45
70 % 117 272 54
50 % 142 393 28
40 % 142 393 39
30 % 142 393 58
Entity #22 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 217 49
95 % 116 268 50
90 % 116 268 53
70 % 116 268 64
50 % 116 268 89
40 % 116 268 110
30 % 116 268 122
Entity #23 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 259 41
95 % 116 259 56
90 % 116 259 59
70 % 116 259 69
50 % 116 259 94
40 % 116 259 116
30 % 116 259 129
Entity #3 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 269 31
95 % 116 270 41
90 % 116 270 46
70 % 116 270 55
50 % 141 387 33
40 % 141 390 42
30 % 141 390 61
Entity #5 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 233 45
95 % 104 233 63
90 % 104 233 67
70 % 104 233 78
50 % 108 301 78
40 % 108 301 96
30 % 108 301 113
Entity #6 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 262 39
95 % 116 270 42
90 % 116 270 47
70 % 116 270 56
50 % 141 389 31
40 % 141 392 40
30 % 141 392 60
Entity #7 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 269 34
95 % 116 269 46
90 % 116 269 49
70 % 116 269 59
50 % 142 393 29
40 % 142 393 41
30 % 142 395 57
Entity #8 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 274 24
95 % 124 280 33
90 % 124 280 38
70 % 124 280 49
50 % 124 280 83
40 % 124 280 102
30 % 147 334 87
Entity #9 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 273 26
95 % 117 274 37
90 % 117 274 41
70 % 117 274 51
50 % 142 336 65
40 % 142 339 75
30 % 142 339 89

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.