Sequence Similarity Clusters for the Entities in PDB 1N2D

Entity #1 | Chains: A,B
Myosin Light Chain protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 22781
95 % 2 3 19640 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.7
PDBFlex
90 % 2 3 19119
70 % 2 3 17656
50 % 2 3 15329
40 % 71 341 42
30 % 75 368 53
Entity #2 | Chains: C
IQ2 AND IQ3 MOTIFS FROM MYO2P, A CLASS V MYOSIN protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73728
95 % 1 1 51261
90 % 1 1 48625
70 % 1 1 42651
50 % 1 1 36380
40 % 1 1 32019
30 % 1 1 27073

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures