Sequence Similarity Clusters for the Entities in PDB 1N2D

Entity #1 | Chains: A,B
Myosin Light Chain protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 22457
95 % 2 3 20115 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.7
PDBFlex
90 % 2 3 19547
70 % 2 3 17932
50 % 2 3 15577
40 % 74 361 40
30 % 92 432 41
Entity #2 | Chains: C
IQ2 AND IQ3 MOTIFS FROM MYO2P, A CLASS V MYOSIN protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65631
95 % 1 1 53184
90 % 1 1 50412
70 % 1 1 44094
50 % 1 1 37400
40 % 1 1 32713
30 % 1 1 27359

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures