Sequence Similarity Clusters for the Entities in PDB 1N2C

Entity #1 | Chains: A,C
NITROGENASE MOLYBDENUM-IRON PROTEIN protein, length: 491 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 16 855
95 % 23 26 763 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.4
PDBFlex
90 % 23 26 796
70 % 29 32 682
50 % 29 32 730
40 % 29 32 760
30 % 30 34 682
Entity #2 | Chains: B,D
NITROGENASE MOLYBDENUM-IRON PROTEIN protein, length: 522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 24 695
95 % 23 26 762 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 23 26 795
70 % 23 26 836
50 % 29 32 729
40 % 29 32 759
30 % 29 32 759
Entity #3 | Chains: E,F,G,H
NITROGENASE IRON PROTEIN protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 12 765
95 % 16 21 664 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 16 21 693
70 % 16 21 730
50 % 17 22 760
40 % 17 22 799
30 % 17 22 789

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures