Sequence Similarity Clusters for the Entities in PDB 1N25

Entity #1 | Chains: A,B
Large T Antigen protein, length: 368 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 1163
95 % 5 7 1393 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 5 7 1413
70 % 9 11 1323
50 % 9 11 1357
40 % 9 11 1335
30 % 9 11 1330

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1SVM 1 A, B, C, D, E, F large T antigen HELICASE DOMAIN 1891767 3.6.4 | Details
2 1SVL 1 A, B, C large T antigen HELICASE DOMAIN 1891767 3.6.4 | Details
3 2H1L 1 A, B, C, D, E, F, G, H, I, J, K, L Large T antigen Helicase Domain, residues 260-627 1891767 3.6.4 | Details
4 1SVO 1 A, B large T antigen HELICASE DOMAIN 1891767 3.6.4 | Details
5 1N25 1 A, B Large T Antigen helicase domain 1891767 3.6.4 | Details
6 5TCT 1 A, B, C, D, E, F Large T antigen 1891767 3.6.4 | Details
7 4E2I 1 A, B, C, D, E, F, G, H, I, J, K, L Large T antigen UNP residues 266-627 1891767 3.6.4 | Details