Sequence Similarity Clusters for the Entities in PDB 1N1L

Entity #1 | Chains: A,B
HCV NS3 SERINE PROTEASE protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 42382
95 % 12 30 859
90 % 44 64 358
70 % 60 89 248
50 % 60 89 265
40 % 60 89 278
30 % 60 89 288
Entity #2 | Chains: C,D
NS4A COFACTOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 29 645
95 % 13 31 793
90 % 13 31 822
70 % 13 31 860
50 % 13 31 912
40 % 13 31 938
30 % 13 31 919

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures