Sequence Similarity Clusters for the Entities in PDB 1N1L

Entity #1 | Chains: A,B
HCV NS3 SERINE PROTEASE protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40553
95 % 12 30 822 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 44 64 345
70 % 60 89 218
50 % 60 89 249
40 % 60 89 266
30 % 60 89 276
Entity #2 | Chains: C,D
NS4A COFACTOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 29 615
95 % 13 31 763 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 13 31 789
70 % 13 31 838
50 % 13 31 880
40 % 13 31 901
30 % 13 31 886

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.