Sequence Similarity Clusters for the Entities in PDB 1N1L

Entity #1 | Chains: A,B
HCV NS3 SERINE PROTEASE protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 7501
95 % 12 30 882 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 44 64 369
70 % 60 89 247
50 % 60 89 269
40 % 60 89 298
30 % 60 89 314
Entity #2 | Chains: C,D
NS4A COFACTOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 31 662
95 % 13 31 807 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 13 31 834
70 % 13 31 877
50 % 13 31 935
40 % 13 31 951
30 % 13 31 942

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures