Sequence Similarity Clusters for the Entities in PDB 1N1J

Entity #1 | Chains: A
NF-YB protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29647
95 % 2 3 24568 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 3 23775
70 % 2 5 13800
50 % 2 6 10982
40 % 2 6 9962
30 % 2 6 8682
Entity #2 | Chains: B
NF-YC protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29594
95 % 2 3 24522 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 3 23730
70 % 2 3 21595
50 % 2 4 15900
40 % 2 4 14174
30 % 2 4 12133

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.