Sequence Similarity Clusters for the Entities in PDB 1N1J

Entity #1 | Chains: A
NF-YB protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28181
95 % 2 3 24687 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 3 23854
70 % 2 5 14439
50 % 2 6 11388
40 % 2 6 10227
30 % 2 6 8733
Entity #2 | Chains: B
NF-YC protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29252
95 % 2 3 25573 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 3 24684
70 % 2 4 18709
50 % 2 4 16210
40 % 2 4 14356
30 % 2 6 8665

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures