Sequence Similarity Clusters for the Entities in PDB 1N1J

Entity #1 | Chains: A
NF-YB protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 30660
95 % 2 3 25369 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 3 24519
70 % 2 5 14269
50 % 2 6 11343
40 % 2 6 10274
30 % 2 6 8953
Entity #2 | Chains: B
NF-YC protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 30608
95 % 2 3 25325 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 3 24476
70 % 2 3 22231
50 % 2 4 16389
40 % 2 4 14591
30 % 2 4 12485

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures