Sequence Similarity Clusters for the Entities in PDB 1N0X

Entity #1 | Chains: L,M
IMMUNOGLOBULIN LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 8013
95 % 1 5 8076 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 5 8007
70 % 449 2553 1
50 % 921 5180 1
40 % 1114 5834 1
30 % 1359 7269 1
Entity #2 | Chains: H,K
IMMUNOGLOBULIN HEAVY CHAIN protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26422
95 % 1 4 11346 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 1 4 11236
70 % 450 2511 2
50 % 922 5180 1
40 % 1115 5834 1
30 % 1360 7269 1
Entity #3 | Chains: P,R
B2.1 peptide protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 45062
95 % 1 1 34989
90 % 1 1 33436
70 % 1 1 29791
50 % 1 1 25411
40 % 1 1 22307
30 % 1 1 18595

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures