Sequence Similarity Clusters for the Entities in PDB 1N0X

Entity #1 | Chains: L,M
IMMUNOGLOBULIN LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 7407
95 % 1 5 7970 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 5 7910
70 % 418 2416 1
50 % 856 4892 1
40 % 856 4892 1
30 % 928 5759 1
Entity #2 | Chains: H,K
IMMUNOGLOBULIN HEAVY CHAIN protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28016
95 % 1 4 10655 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 4 10521
70 % 418 2366 2
50 % 857 4892 1
40 % 857 4892 1
30 % 929 5759 1
Entity #3 | Chains: P,R
B2.1 peptide protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50508
95 % 1 1 37787
90 % 1 1 36064
70 % 1 1 32080
50 % 1 1 27460
40 % 1 1 24297
30 % 1 1 20695

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures