Sequence Similarity Clusters for the Entities in PDB 1N0X

Entity #1 | Chains: L,M
IMMUNOGLOBULIN LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 7237
95 % 1 5 7815 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 5 7762
70 % 397 2327 1
50 % 812 4713 1
40 % 812 4713 1
30 % 881 5567 1
Entity #2 | Chains: H,K
IMMUNOGLOBULIN HEAVY CHAIN protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27416
95 % 1 4 10456 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 4 10325
70 % 397 2280 2
50 % 813 4713 1
40 % 813 4713 1
30 % 882 5567 1
Entity #3 | Chains: P,R
B2.1 peptide protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49529
95 % 1 1 37083
90 % 1 1 35424
70 % 1 1 31543
50 % 1 1 27018
40 % 1 1 23915
30 % 1 1 20387

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.