Sequence Similarity Clusters for the Entities in PDB 1N0X

Entity #1 | Chains: L,M
IMMUNOGLOBULIN LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 7531
95 % 1 5 8103 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 5 8040
70 % 439 2474 1
50 % 899 5011 1
40 % 899 5011 1
30 % 1007 5941 1
Entity #2 | Chains: H,K
IMMUNOGLOBULIN HEAVY CHAIN protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28414
95 % 1 4 10849 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 4 10714
70 % 439 2424 2
50 % 900 5011 1
40 % 900 5011 1
30 % 1008 5941 1
Entity #3 | Chains: P,R
B2.1 peptide protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51156
95 % 1 1 38253
90 % 1 1 36494
70 % 1 1 32449
50 % 1 1 27754
40 % 1 1 24564
30 % 1 1 20927

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures