Sequence Similarity Clusters for the Entities in PDB 1MZN

Entity #1 | Chains: A,C,E,G
RXR retinoid X receptor protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 59 259
95 % 5 63 344 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.4
PDBFlex
90 % 5 65 356
70 % 5 81 294
50 % 5 81 341
40 % 7 94 284
30 % 148 992 10
Entity #2 | Chains: B,D,F,H
Nuclear receptor coactivator 2 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5MKU 1 A Retinoic acid receptor RXR-alpha 9606
2 2P1T 1 A Retinoic acid receptor RXR-alpha ligand binding domain (residues 223-462) 9606
3 4ZSH 1 A Retinoic acid receptor RXR-alpha Ligand binding domain residues 223 - 462 9606
4 3E94 1 A Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
5 1MZN 1 A, C, E, G RXR retinoid X receptor ligand binding domain(residues 223-462) 9606
6 5MJ5 1 A Retinoic acid receptor RXR-alpha 9606
7 5MK4 1 A, C Retinoic acid receptor RXR-alpha UNP residues 229-457 9606
8 1MV9 1 A RXR retinoid X receptor ligand binding domain(residues 223-462) 9606
9 1MVC 1 A RXR retinoid X receptor ligand binding domain(residues 223-462) 9606
10 4RMD 1 A Retinoic acid receptor RXR-alpha ligand binding domain 228-458 9606
11 5JI0 1 A Retinoic acid receptor RXR-alpha 9606
12 4N8R 1 A, B, C, D Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
13 3PCU 1 A Retinoic acid receptor RXR-alpha UNP residues 229-458 9606
14 3FUG 1 A Retinoic acid receptor RXR-alpha LIGAND BINDING DOMAIN (RESIDUES 223-462) 9606
15 4PP5 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain, UNP residues 228-458 9606
16 3OAP 1 A Retinoic acid receptor RXR-alpha hRXRalpha-LBD, UNP residues 228-458 9606
17 3FC6 1 A, C Retinoic acid receptor RXR-alpha 9606
18 4POJ 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain, UNP residues 228-458 9606
19 4N5G 1 A, B, C, D Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
20 5EC9 1 A Retinoic acid receptor RXR-alpha 9606
21 1G5Y 1 A, B, C, D RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN (RESIDUES 225 - 462) 9606
22 4PP3 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain, UNP residues 228-458 9606
23 4K4J 1 A Retinoic acid receptor RXR-alpha ligand binding domain, UNP residues 228-458 9606
24 2P1V 1 A Retinoic acid receptor RXR-alpha ligand binding domain (residues 223-462) 9606
25 2P1U 1 A Retinoic acid receptor RXR-alpha ligand binding domain (residues 223-462) 9606
26 3KWY 1 A Retinoic acid receptor RXR-alpha ligand binding domain 9606
27 5LYQ 1 A Retinoic acid receptor RXR-alpha UNP residues 223-462 9606
28 1FM9 1 A RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN - RESIDUES 225 - 462 9606
29 3OZJ 1 A, C Retinoic acid receptor RXR-alpha ligand-binding domain, UNP residues 225-462 9606
30 4K6I 1 A Retinoic acid receptor RXR-alpha ligand binding domain, UNP residues 228-458 9606
31 4M8H 1 A Retinoic acid receptor RXR-alpha HRXRALPHA-LBD, UNP RESIDUES 228-458 9606
32 1FM6 1 A, U RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN - RESIDUES 225 -462 9606
33 3H0A 1 A Retinoic acid receptor RXR-alpha UNP RESIDUES 228-455 9606
34 4RME 1 A Retinoic acid receptor RXR-alpha ligand binding domain 228-458 9606
35 4POH 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain, UNP residues 228-458 9606
36 1FBY 1 A, B RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN 9606
37 4M8E 1 A Retinoic acid receptor RXR-alpha HRXRALPHA-LBD, UNP RESIDUES 228-458 9606
38 4RFW 1 A Retinoic acid receptor RXR-alpha ligand binding domain residues 228-458 9606
39 1XVP 1 A, C Retinoic acid receptor RXR-alpha LBD domain 9606
40 1XIU 1 A, B RXR-like protein Ligand-binding domain (LBD) 6526
41 5MKJ 1 A Retinoic acid receptor RXR-alpha 9606
42 3FAL 1 A, C Retinoic acid receptor RXR-alpha residues 225-462 9606
43 4OC7 1 A Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
44 1DKF 1 A PROTEIN (RETINOID X RECEPTOR-ALPHA) LIGAND-BINDING DOMAIN 10090
45 1K74 1 A Retinoic acid receptor RXR-alpha ligand binding domain - residues 225 - 462 9606
46 1RDT 1 A Retinoic acid receptor RXR-alpha ligand binding doamin 9606
47 1XV9 1 A, C Retinoic acid receptor RXR-alpha LBD domain 9606
48 5TBP 1 A, B, C, D Retinoic acid receptor RXR-alpha UNP residues 223-462 9606
49 4OZT 2 U Retinoid X receptor UNP residues 222-416 121225
50 5KYA 2 B, F Retinoic acid receptor RXR-beta 9606
51 4RMC 1 A Retinoic acid receptor RXR-alpha ligand binding domain 228-458 9606
52 1G1U 1 A, B, C, D RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN (RESIDUES 225 - 462) 9606
53 5I4V 2 B, F Retinoic acid receptor RXR-beta,Nuclear receptor coactivator 2 9606
54 2GL8 1 A, B, C, D Retinoic acid receptor RXR-gamma 9606
55 5MMW 1 A Retinoic acid receptor RXR-alpha 9606
56 3A9E 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain 10090
57 3EYB 1 A, B, C, D Nuclear hormone receptor RXR UNP residues 266-484, Ligand binding domain 7739
58 5KYJ 2 B, F Retinoic acid receptor RXR-beta 9606
59 5HJP 1 A, C Retinoic acid receptor RXR-beta 9606
60 4OZR 2 U Retinoid X receptor UNP residues 222-415 121225
61 1LBD 1 A RETINOID X RECEPTOR HISTIDINE TAG PLUS DOMAIN D PLUS LIGAND-BINDING DOMAIN E 9606
62 2ACL 1 A, C, E, G Retinoic acid receptor RXR-alpha 9606
63 3UVV 2 B Retinoic acid receptor RXR-alpha ligand binding domain (UNP Residues 225-462) 9606
64 2ZY0 1 A, C Retinoic acid receptor RXR-alpha Ligand Binding Domain 9606
65 2ZXZ 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain 9606
66 1UHL 1 A Retinoic acid receptor RXR-beta residues 298-533 9606
67 1Z5X 1 U Ultraspiracle protein (USP) a homologue of RXR 7038
68 3NSQ 1 A, B Retinoid X receptor, alpha ligand binding domain 9606
69 3NSP 1 A, B Retinoid X receptor, alpha ligand binding domain 9606
70 2NXX 1 A, B, C, D Ultraspiracle (USP, NR2B4) Ligand Binding Domain 7070
71 4J5X 1 C, D Retinoic acid receptor RXR-alpha, Nuclear receptor coactivator 1 9606 2.3.1.48 | Details
72 3R5M 1 A, C Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
73 4J5W 2 C, D Retinoic acid receptor RXR-alpha, Nuclear receptor coactivator 1 9606 2.3.1.48 | Details
74 3R29 1 A, B Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
75 1H9U 1 A, B, C, D RETINOID X RECEPTOR, BETA LIGAND BINDING DOMAIN RESIDUES 299-522 9606
76 1XDK 1 A, E Retinoic acid receptor RXR-alpha Ligand-Binding Domain 10090
77 1XLS 1 A, B, C, D Retinoic acid receptor RXR-alpha CAR LBD 9606
78 3R2A 1 A, B, C, D Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
79 5GYM 1 A, B, C, D, E, F, G, H Retinoic acid receptor RXR-alpha UNP RESIDUES 227-462 9606
80 2Q60 1 A, B, C, D Retinoid X receptor ligand binding domain 7723
81 4ZO1 3 B Retinoic acid receptor RXR-alpha ligand binding domain, unp residues 231-455 9606