Sequence Similarity Clusters for the Entities in PDB 1MZN

Entity #1 | Chains: A,C,E,G
RXR retinoid X receptor protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 53 295
95 % 4 57 377 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.4
PDBFlex
90 % 4 58 398
70 % 4 75 310
50 % 4 75 371
40 % 6 88 306
30 % 147 983 10
Entity #2 | Chains: B,D,F,H
Nuclear receptor coactivator 2 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2P1T 1 A Retinoic acid receptor RXR-alpha ligand binding domain (residues 223-462) 9606
2 4ZSH 1 A Retinoic acid receptor RXR-alpha Ligand binding domain residues 223 - 462 9606
3 3E94 1 A Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
4 1MZN 1 A, C, E, G RXR retinoid X receptor ligand binding domain(residues 223-462) 9606
5 1MV9 1 A RXR retinoid X receptor ligand binding domain(residues 223-462) 9606
6 1MVC 1 A RXR retinoid X receptor ligand binding domain(residues 223-462) 9606
7 4RMD 1 A Retinoic acid receptor RXR-alpha ligand binding domain 228-458 9606
8 5JI0 1 A Retinoic acid receptor RXR-alpha 9606
9 4N8R 1 A, B, C, D Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
10 3PCU 1 A Retinoic acid receptor RXR-alpha UNP residues 229-458 9606
11 3FUG 1 A Retinoic acid receptor RXR-alpha LIGAND BINDING DOMAIN (RESIDUES 223-462) 9606
12 4PP5 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain, UNP residues 228-458 9606
13 3OAP 1 A Retinoic acid receptor RXR-alpha hRXRalpha-LBD, UNP residues 228-458 9606
14 3FC6 1 A, C Retinoic acid receptor RXR-alpha 9606
15 4POJ 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain, UNP residues 228-458 9606
16 4N5G 1 A, B, C, D Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
17 5EC9 1 A Retinoic acid receptor RXR-alpha 9606
18 1G5Y 1 A, B, C, D RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN (RESIDUES 225 - 462) 9606
19 4PP3 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain, UNP residues 228-458 9606
20 4K4J 1 A Retinoic acid receptor RXR-alpha ligand binding domain, UNP residues 228-458 9606
21 2P1V 1 A Retinoic acid receptor RXR-alpha ligand binding domain (residues 223-462) 9606
22 2P1U 1 A Retinoic acid receptor RXR-alpha ligand binding domain (residues 223-462) 9606
23 3KWY 1 A Retinoic acid receptor RXR-alpha ligand binding domain 9606
24 5LYQ 1 A Retinoic acid receptor RXR-alpha UNP residues 223-462 9606
25 1FM9 1 A RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN - RESIDUES 225 - 462 9606
26 3OZJ 1 A, C Retinoic acid receptor RXR-alpha ligand-binding domain, UNP residues 225-462 9606
27 4K6I 1 A Retinoic acid receptor RXR-alpha ligand binding domain, UNP residues 228-458 9606
28 4M8H 1 A Retinoic acid receptor RXR-alpha HRXRALPHA-LBD, UNP RESIDUES 228-458 9606
29 1FM6 1 A, U RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN - RESIDUES 225 -462 9606
30 3H0A 1 A Retinoic acid receptor RXR-alpha UNP RESIDUES 228-455 9606
31 4RME 1 A Retinoic acid receptor RXR-alpha ligand binding domain 228-458 9606
32 4POH 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain, UNP residues 228-458 9606
33 1FBY 1 A, B RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN 9606
34 4M8E 1 A Retinoic acid receptor RXR-alpha HRXRALPHA-LBD, UNP RESIDUES 228-458 9606
35 4RFW 1 A Retinoic acid receptor RXR-alpha ligand binding domain residues 228-458 9606
36 1XVP 1 A, C Retinoic acid receptor RXR-alpha LBD domain 9606
37 1XIU 1 A, B RXR-like protein Ligand-binding domain (LBD) 6526
38 3FAL 1 A, C Retinoic acid receptor RXR-alpha residues 225-462 9606
39 4OC7 1 A Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
40 1DKF 1 A PROTEIN (RETINOID X RECEPTOR-ALPHA) LIGAND-BINDING DOMAIN 10090
41 1K74 1 A Retinoic acid receptor RXR-alpha ligand binding domain - residues 225 - 462 9606
42 1RDT 1 A Retinoic acid receptor RXR-alpha ligand binding doamin 9606
43 1XV9 1 A, C Retinoic acid receptor RXR-alpha LBD domain 9606
44 5TBP 1 A, B, C, D Retinoic acid receptor RXR-alpha UNP residues 223-462 9606
45 4OZT 2 U Retinoid X receptor UNP residues 222-416 121225
46 5KYA 2 B, F Retinoic acid receptor RXR-beta 9606
47 4RMC 1 A Retinoic acid receptor RXR-alpha ligand binding domain 228-458 9606
48 1G1U 1 A, B, C, D RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN (RESIDUES 225 - 462) 9606
49 5I4V 2 B, F Retinoic acid receptor RXR-beta,Nuclear receptor coactivator 2 9606
50 2GL8 1 A, B, C, D Retinoic acid receptor RXR-gamma 9606
51 3A9E 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain 10090
52 3EYB 1 A, B, C, D Nuclear hormone receptor RXR UNP residues 266-484, Ligand binding domain 7739
53 5KYJ 2 B, F Retinoic acid receptor RXR-beta 9606
54 5HJP 1 A, C Retinoic acid receptor RXR-beta 9606
55 4OZR 2 U Retinoid X receptor UNP residues 222-415 121225
56 1LBD 1 A RETINOID X RECEPTOR HISTIDINE TAG PLUS DOMAIN D PLUS LIGAND-BINDING DOMAIN E 9606
57 2ACL 1 A, C, E, G Retinoic acid receptor RXR-alpha 9606
58 3UVV 2 B Retinoic acid receptor RXR-alpha ligand binding domain (UNP Residues 225-462) 9606
59 2ZY0 1 A, C Retinoic acid receptor RXR-alpha Ligand Binding Domain 9606
60 2ZXZ 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain 9606
61 1UHL 1 A Retinoic acid receptor RXR-beta residues 298-533 9606
62 1Z5X 1 U Ultraspiracle protein (USP) a homologue of RXR 7038
63 3NSQ 1 A, B Retinoid X receptor, alpha ligand binding domain 9606
64 3NSP 1 A, B Retinoid X receptor, alpha ligand binding domain 9606
65 2NXX 1 A, B, C, D Ultraspiracle (USP, NR2B4) Ligand Binding Domain 7070
66 4J5X 1 C, D Retinoic acid receptor RXR-alpha, Nuclear receptor coactivator 1 9606 2.3.1.48 | Details
67 3R5M 1 A, C Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
68 4J5W 2 C, D Retinoic acid receptor RXR-alpha, Nuclear receptor coactivator 1 9606 2.3.1.48 | Details
69 3R29 1 A, B Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
70 1H9U 1 A, B, C, D RETINOID X RECEPTOR, BETA LIGAND BINDING DOMAIN RESIDUES 299-522 9606
71 1XDK 1 A, E Retinoic acid receptor RXR-alpha Ligand-Binding Domain 10090
72 1XLS 1 A, B, C, D Retinoic acid receptor RXR-alpha CAR LBD 9606
73 3R2A 1 A, B, C, D Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
74 2Q60 1 A, B, C, D Retinoid X receptor ligand binding domain 7723
75 4ZO1 3 B Retinoic acid receptor RXR-alpha ligand binding domain, unp residues 231-455 9606