Sequence Similarity Clusters for the Entities in PDB 1MY1

Entity #1 | Chains: A,B,C
GLUTAMATE RECEPTOR 2 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 81 119 99
95 % 112 161 65 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 125 184 65
70 % 125 184 78
50 % 190 278 39
40 % 190 279 54
30 % 235 360 51

Instructions

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5NG9 1 A Glutamate receptor 2 THE PROTEIN CRYSTALLIZED IS THE EXTRACELLULAR LIGAND-BINDING DOMIAN OF GLUA2. TRANSMEMBRANE REGIONS WERE REPLACED WITH A GLY-THR LINKER (118-119). SEQUENCE MATCHES DISCONTINUOUSLY WITH THE REFERENCE DATABASE (413-527, 653-797). RESIDUES 1-2 ARE CLONING REMNANTS. 10116
2 5JEI 1 A Glutamate receptor 2,Glutamate receptor 2 10116
3 4IGT 1 A Glutamate receptor 2 Ligand-binding domain, UNP RESIDUES 413-527, 653-796 10116
4 4YU0 1 A, B Glutamate receptor 2,Glutamate receptor 2 10116
5 5NIH 1 A, B Glutamate receptor 2 THE PROTEIN CRYSTALLIZED IS THE EXTRACELLULAR LIGAND-BINDING DOMIAN OF GLUA2. TRANSMEMBRANE REGIONS WERE REPLACED WITH A GLY-THR LINKER (118-119). SEQUENCE MATCHES DISCONTINUOUSLY WITH THE REFERENCE DATABASE (413-527, 653-797). RESIDUES 1-2 ARE CLONING REMNANTS. 10116
6 5FTI 1 A, B GLUTAMATE RECEPTOR 2 LIGAND BINDING DOMAIN, UNP RESIDUES 404-527,653-796 10116
7 5NS9 1 A, B Glutamate receptor 2,Glutamate receptor 2 M1-R29 --> expression-tag followed by thrombin cleavage site G294 is not resolved in the structure 10116
8 4FAT 1 A Glutamate receptor 2 ligand binding domain 10116
9 3TKD 1 A, B GLUTAMATE RECEPTOR 2 Ligand binding domain 10116
10 1MQI 1 A glutamate receptor 2 ligand binding core (S1S2J) 10116
11 4O3C 1 A Glutamate receptor 2 Ligand binding domain (unp residues 413-527 and unp residues 653-796) 10116
12 4U21 1 A, B Glutamate receptor 2,Glutamate receptor 2 10116
13 4Z0I 1 A, B Glutamate receptor 2,Glutamate receptor 2 10116
14 5FHM 1 A, B Glutamate receptor 2,Glutamate receptor 2 Protein crystallized is the extracellular ligand-binding domain of GluA2. Transmembrane regions genetically removed and replaced with Gly-Thr linker (residues 118-119). Protein consists of UNP residues 413-527 and 653-797, numbering with signal peptide of 21 residues. The first two residues (Gly, Ala) are cloning remnants. 10116
15 1MQD 1 A, B, C, D Glutamate receptor subunit 2 Tetherd dimer linked by GLY 115 and THR 116 GluR2-flop ligand-binding core (S1S2J) 10116
16 4U22 1 A Glutamate receptor 2 10116
17 4LZ5 1 A, B, C Glutamate receptor 2 SEE REMARK 999 10116
18 4U2R 1 A, B, C, D Glutamate receptor 2 10116
19 4U4X 1 A, B Glutamate receptor 2,Glutamate receptor 2 UNP residues 413-527, UNP residues 653-796 10116
20 1M5E 1 A, B, C Glutamate receptor 2 GluR2-flop ligand binding core (S1S2J) 10116
21 3H6W 1 A, B Glutamate receptor 2 iGluR2-flop ligand-binding core: UNP residues 413-796 10116
22 5YBF 1 A, B, C, D, E, F Glutamate receptor 2,Glutamate receptor 2 UNP RESIDUES 413-527,UNP RESIDUES 653-796 9606
23 2XXH 1 A, B, C GLUTAMATE RECEPTOR 2 GLUA2FLOPS1-GLYTHR-S2 LIGAND BINDING DOMAIN, RESIDUES 413-527,653-796 10116
24 5FHN 1 A Glutamate receptor 2,Glutamate receptor 2 ligand-binding domain of GluA2. Transmembrane regions genetically removed and replaced with Gly-Thr linker (residues 118-119). Protein consists of UNP residues 413-527 and 653-797, numbering with signal peptide of 21 residues. The first two residues (Gly, Ala) are cloning remnants. 10116
25 2XX8 1 A, B, C GLUTAMATE RECEPTOR 2 GLUA2FLOPS1-GLYTHR-S2 LIGAND BINDING DOMAIN, RESIDUES 413-527,653-796 10116
26 5YBG 1 A, B, C, D, E, F Glutamate receptor 2,Glutamate receptor 2 UNP RESIDUES 413-527,UNP RESIDUES 653-796 9606
27 3KGC 1 A, B Glutamate receptor 2 extracellular domains residues 414-527 and 653-795 10116
28 4IY6 1 A Glutamate receptor 2 Ligand binding domain, UNP RESIDUES 413-527, 653-796 10116
29 2XXI 1 A, B, C GLUTAMATE RECEPTOR 2 GLUA2FLOPS1-GLYTHR-S2 LIGAND BINDING DOMAIN, RESIDUES 413-527,653-796 10116
30 2GFE 1 A, B, C Glutamate receptor 2 10116
31 3DP6 1 A, B, C Glutamate receptor 2 S1S2 binding domain 10116
32 1P1O 1 A Glutamate receptor 2 ligand binding core (S1S2J) 10116
33 1M5C 1 A Glutamate receptor 2 flop ligand binding core (S1S2J) 10116
34 5H8S 1 A, B, C Glutamate receptor 2,Glutamate receptor 2 UNP residues 413-527, GT linker, UNP residues 653-796 9606
35 2AL5 1 A, B Glutamate receptor 2 ligand binding core (S1S2J) 10116
36 5O9A 1 A, B, C, D Glutamate receptor 2,Glutamate receptor 2 Native GluA2 is a membrane protein. The crystallized protein is a double mutant (L540Y, N775S) of the ligand-binding domain of GluA2. Transmembrane regions were replaced with a Gly-Thr linker (residues 117-118). Gly1 is a cloning remnant. The sequence matches discontinuously with reference database (413-527, 653-797). 10116
37 3RTF 1 B, D, F Glutamate receptor 2 SEE REMARK 999 10116
38 1MM7 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
39 4O3A 1 A, B, C Glutamate receptor 2 Ligand binding domain (unp residues 413-527 and unp residues 653-736) 10116
40 1WVJ 1 A ionotropic glutamate receptor 2 Flop ligand-binding core of GluR2(GluR2-S1S2J) 10116
41 1MQJ 1 A glutamate receptor 2 ligand binding core (S1S2J) 10116
42 3RN8 1 A, B, C Glutamate receptor 2 UNP residues 413-527, 653-812 9606
43 1M5D 1 A Glutamate receptor 2 flop ligand binding core (S1S2J-Y702F) 10116
44 1XHY 1 A Glutamate receptor GluR2 flop ligand-binding core (S1S2J), UNP residues 413-527 and 653-796 10116
45 1FTK 1 A GLUTAMATE RECEPTOR SUBUNIT 2 LIGAND BINDING CORE, S1S2I 10116
46 5CBS 1 A, B, C, D Glutamate receptor 2,Glutamate receptor 2 UNP residues 413-527,UNP residues 653-797 10116
47 4O3B 1 A, B Glutamate receptor 2 Ligand binding domain (unp residues 413-527 and unp residues 653-736) 10116
48 3RNN 1 A, B, C Glutamate receptor 2 UNP residues 413-527, 653-812 9606
49 4H8J 1 A, B, C, D Glutamate receptor 2 SEE REMARK 999 10116
50 1SYH 1 A Glutamate receptor 2 GLUR2-FLOP LIGAND-BINDING CORE (S1S2J) 10116
51 2AL4 1 A, B, C, D, E, F Glutamate receptor 2 ligand binding core (S1S2J) 10116
52 4U23 1 A Glutamate receptor 2,Glutamate receptor 2 10116
53 4U1O 1 A Glutamate receptor 2 10116
54 3PMV 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, residues 413 to 527 and 653 to 796 10116
55 4U4S 1 A, B Glutamate receptor 2,Glutamate receptor 2 AMPA RECEPTOR LIGAND BINDING DOMAIN, GLUA2 S1S2J-L483Y-N754S, UNP RESIDUES 413-527 AND 653-796; CRYSTALLIZED WITH ALLOSTERIC MODULATOR BPAM-25. TRANSMEMBRANE REGIONS WERE GENETICALLY REMOVED AND REPLACED WITH A GLY-THR LINKER (118-119). THE FIRST TWO RESIDUES (GLY, ALA) ARE CLONING REMNANTS. UNP residues 413-527, UNP residues 653-796 10116
56 3O6G 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, UNP residues 413 to 527 and 653 to 796 10116
57 3B6W 1 A, B, C, D Glutamate receptor 2 10116
58 1MY3 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
59 3H6U 1 A Glutamate receptor 2 iGluR2-flop ligand-binding core: UNP residues 413-796 10116
60 4N07 1 A, B, C Glutamate receptor 2 unp residues 413-527, unp reisdues 653-796 10116
61 1MQH 1 A glutamate receptor 2 ligand binding core (S1S2J) 10116
62 1P1N 1 A Glutamate receptor 2 ligand binding core (S1S2J) 10116
63 5ELV 1 A, B Glutamate receptor 2,Glutamate receptor 2 THE PROTEIN COMPRISES SEGMENT S1 RESIDUES 413-527, A GT LINKER AND S2 RESIDUES 653-798. UNP residues, 413-527,UNP residue, 653-797 10116
64 3O2A 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, UNP residues 413 to 527 and 653 to 796 10116
65 4YMA 1 A, B Glutamate receptor 2 The protein comprises segment S1 residues 413-527, a GT linker and S2 residues 653-797. 10116
66 4X48 1 A, B, C Glutamate receptor 2 Ligand binding domain, engineered single chain 10116
67 2XHD 1 A, B GLUTAMATE RECEPTOR 2 THIS IS AN S1-S2 FUSION IN WHICH GLY 118 AND THR 119 REPLACE A MEMBRANE SPANNING REGION. LIGAND BINDING DOMAIN, RESIDUES 412-427 AND 653-796 9606
68 3M3L 1 A, D, G Glutamate receptor 2 UNP residues 414-527, 652-794 10116
69 3TZA 1 A, B Glutamate receptor 2,Glutamate receptor 2 The protein crystallized is the extracellular ligand-binding domian of GluA2. Transmembrane regions were genetically removed and replaced with a Gly-Thr linker. Ligand binding domain, UNP resiudes 413-527,UNP residues 653-796 10116
70 3T96 1 B, D, F Glutamate receptor 2 SEE REMARK 999 10116
71 3T9X 1 B, D, F Glutamate receptor 2 SEE REMARK 999 10116
72 4U1Z 1 A Glutamate receptor 2,Glutamate receptor 2 10116
73 3O6I 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, UNP residues 413 to 527 and 653 to 796 10116
74 4IY5 1 A, B Glutamate receptor 2 Ligand binding domain, UNP RESIDUES 413-527, 653-796 10116
75 1MXU 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
76 1M5B 1 A, B, C Glutamate receptor 2 flop ligand binding core (S1S2J) 10116
77 3LSF 1 B, E, H Glutamate receptor 2 10116
78 4LZ8 1 A, B, C Glutamate receptor 2 SEE REMARK 999 10116
79 1FTM 1 A, B, C GLUTAMATE RECEPTOR SUBUNIT 2 GLUR2-FLOP LIGAND BINDING CORE (S1S2J) 10116
80 3T93 1 B, D, F Glutamate receptor 2 SEE REMARK 999 10116
81 3UA8 1 A Glutamate receptor 2 SEE REMARK 999 9606
82 3TDJ 1 A, B Glutamate receptor 2 Ligand binding domain, UNP residues 413-527 and 653-796 10116
83 3T9U 1 A, B, C Glutamate receptor 2 SEE REMARK 999 10116
84 1NNP 1 A, B Glutamate receptor 2 GluR2-flop ligand-binding core (S1S2J) 10116
85 1NNK 1 A Glutamate receptor 2 GluR2-flop ligand-binding core (S1S2J) 10116
86 1LBC 1 A, B, C Glutamine Receptor 2 ligand binding core 10116
87 5OEW 1 A, B, C Glutamate receptor 2 Ligand-binding domain, UNP residues 413-527 and 653-797 connected by a GT linker (numbering including signal peptide) 10116
88 1MY2 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
89 3T9V 1 A, B Glutamate receptor 2 SEE REMARK 999 10116
90 3BKI 1 B, C, D, P Glutamate receptor 2 10116
91 1P1W 1 A, B Glutamate receptor 2 precursor ligand binding core (S1S2J) 10116
92 3O29 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, UNP residues 413 to 527 and 653 to 796 10116
93 2XX9 1 A, B, C GLUTAMATE RECEPTOR 2 GLUA2FLOPS1-GLYTHR-S2 LIGAND BINDING DOMAIN, RESIDUES 413-527,653-796 10116
94 4GXS 1 B, D Glutamate receptor 2 UNP Residues 652-794 10116
95 1M5F 1 A, B, C Glutamate receptor 2 flop ligand binding core (S1S2J-Y702F) 10116
96 1MS7 1 A, B, C Glutamate receptor subunit 2 GluR2-flop ligand-binding core (S1S2J) 10116
97 3O28 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, UNP residues 413 to 527 and 653 to 796 10116
98 3B6Q 1 A Glutamate receptor 2 10116
99 3PMX 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, residues 413 to 527 and 653 to 796 10116
100 1MY4 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
101 3BFU 1 A, B, C, D Glutamate receptor 2 residues 1-263 10116
102 5CBR 1 A Glutamate receptor 2,Glutamate receptor 2 10116
103 3IL1 1 B, E, H Glutamate receptor 2 S1S2 binding domain 10116
104 1FTL 1 A, B GLUTAMATE RECEPTOR SUBUNIT 2 LIGAND BINDING CORE (S1S2J) 10116
105 1GR2 1 A PROTEIN (GLUTAMATE RECEPTOR 2) LIGAND BINDING DOMAIN 10116
106 3ILU 1 B, E, H Glutamate receptor 2 S1S2 binding domain 10116
107 3T9H 1 B, D, F Glutamate receptor 2 SEE REMARK 999 10116
108 3H03 1 A, B, D, G Glutamate receptor 2 UNP residues 414-527, 652-794 10116
109 4Q30 1 B, D, F Glutamate receptor 2 CHIMERIC PROTEIN 10116
110 4G8M 1 A, B Glutamate receptor 2 UNP residues 413-527, 653-796 10116
111 1MXV 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
112 1MY1 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
113 3IJO 1 B, E, H Glutamate receptor 2 10116
114 1MXW 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
115 1MY0 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
116 1MXZ 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
117 3PD9 1 A, B Glutamate receptor 2 UNP residues 413-527, 653-795 10116
118 2ANJ 1 A Glutamate receptor 2 Ligand Binding Core 10116
119 3H6V 1 A, B Glutamate receptor 2 iGluR2-flop ligand-binding core: UNP residues 413-796 10116
120 1MXY 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
121 2XX7 1 A, B, C GLUTAMATE RECEPTOR 2 GLUA2 FLOP ISOFORM S1-DOMAIN-GLYTHR-S2-DOMAIN LIGAND BINDING DOMAIN, RESIDUES 413-527,653-795 10116
122 1MXX 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
123 1N0T 1 A, B, C, D Glutamate receptor 2 GluR2-flop ligand-binding core (S1S2J). 10116
124 1MQG 1 A, B glutamate receptor 2 ligand binding core (S1S2J) 10116
125 4LZ7 1 A, B, C Glutamate receptor 2 SEE REMARK 999 10116
126 1P1Q 1 A, B, C Glutamate receptor 2 ligand binding core (S1S2J) 10116
127 5BUU 1 A, B Glutamate receptor 2,Glutamate receptor 2 Ligand-binding domain, UNP residues 392-506 and 632-775 connected by a GT linker (numbering without signal peptide) UNP residues 413-527,UNP residues 653-796 10116
128 3IK6 1 B, E, H Glutamate receptor 2 S1S2 binding domain 10116
129 3BBR 1 A, B Glutamate receptor 2 Ligand binding core 10116
130 1LBB 1 A Glutamine receptor 2 ligand binding core (flop) 10116
131 1MM6 1 A, B GLUTAMATE RECEPTOR 2 LIGAND BINDING CORE (S1S2J) 10116
132 3RTW 1 B, D, F Glutamate receptor 2 SEE REMARK 999 10116
133 1SYI 1 A, B Glutamate receptor 2 GLUR2-FLOP LIGAND-BINDING CORE (S1S2J) 10116
134 3R7X 1 A, B Glutamate receptor 2 SEE REMARK 999 9606
135 3LSL 1 A, D, G Glutamate receptor 2 10116
136 3B6T 1 A Glutamate receptor 2 10116
137 2AIX 1 A Glutamate receptor 2 GLUR2-FLOP LIGAND-BINDING CORE (S1S2J). 10116
138 3ILT 1 B, E, H Glutamate receptor 2 S1S2 binding domain 10116
139 3H6T 1 A, B, C Glutamate receptor 2 iGluR2-flop ligand-binding core: UNP residues 413-796 10116
140 1P1U 1 A, B Glutamate receptor 2 ligand binding core (S1S2J) 10116
141 5FHO 1 A, B, C, D Glutamate receptor 2,Glutamate receptor 2 Protein crystallized is the extracellular ligand-binding domain of GluA2. Transmembrane regions genetically removed and replaced with Gly-Thr linker (residues 118-119). Protein consists of UNP residues 413-527 and 653-797, numbering with signal peptide of 21 residues. The first two residues (Gly, Ala) are cloning remnants. 10116
142 3O6H 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, UNP residues 413 to 527 and 653 to 796 10116
143 1FTO 1 A, B GLUTAMATE RECEPTOR SUBUNIT 2 LIGAND BINDING CORE (S1S2J) 10116
144 1FTJ 1 A, B, C GLUTAMATE RECEPTOR SUBUNIT 2 LIGAND BINDING CORE (S1S2J)) 10116
145 4ISU 1 A, B, C, D Glutamate receptor 2 Ligand-binding domain 10116
146 1FW0 1 A GLUTAMATE RECEPTOR SUBUNIT 2 LIGAND BINDING CORE (S1S2J) 10116
147 2UXA 1 A, B, C GLUTAMATE RECEPTOR SUBUNIT GLUR2-FLIP LIGAND BINDING CORE, RESIDUES 412-527,653-795 10116
148 3BFT 1 A, B, C Glutamate receptor 2 residues 1-263 10116
149 2P2A 1 A, B Glutamate receptor 2 GluR2-Flop ligand-binding core (Residues 413-527, 653-796) 10116
150 3PMW 1 A Glutamate receptor 2 S1-S2 fusion in which Gly118 and Thr119 replace a membrane-spanning region Ligand binding domain, residues 413 to 527 and 653 to 796 10116
151 3PD8 1 A, B, C Glutamate receptor 2 UNP residues 413-527, 653-795 10116
152 1LB8 1 A, B Glutamate receptor 2 ligand-binding core (flop) 10116
153 1LB9 1 A, B Glutamate receptor 2 ligand binding core (flop) 10116
154 2I3W 1 A, B GLUTAMATE RECEPTOR SUBUNIT 2 LIGAND BINDING CORE (S1S2J) 10116
155 2I3V 1 A, B, C, D Glutamate receptor 2 LIGAND BINDING CORE (S1S2J) 10116
156 2CMO 1 A, B GLUTAMATE RECEPTOR 2 RESIDUES 413-527,653-796 10116
157 4L17 1 A, C, E, G Glutamate receptor 2 Ligand binding domain (UNP residues 413-527, 653-796) 10116
158 3IJX 1 B, D, H Glutamate receptor 2 10116
159 3B7D 1 A, B, C, D, E, F, G, H Glutamate receptor 2 10116
160 3H06 1 B, E, G, H, J, L, N, P Glutamate receptor 2 UNP residues 414-527, 652-794 10116
161 5FTH 1 A, B, C GLUTAMATE RECEPTOR 2 LIGAND BINDING DOMAIN, UNP RESIDUES 404-527,653-796 10116