Sequence Similarity Clusters for the Entities in PDB 1MWA

Entity #1 | Chains: A,C
2C T CELL RECEPTOR ALPHA CHAIN protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10310
95 % 2 4 10315 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 2 4 10181
70 % 16 25 1277
50 % 203 287 83
40 % 203 287 102
30 % 3846 5394 1
Entity #2 | Chains: B,D
2C T CELL RECEPTOR BETA CHAIN protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10199
95 % 6 11 3050 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.6
PDBFlex
90 % 9 16 1893
70 % 213 297 45
50 % 213 300 77
40 % 213 300 95
30 % 3847 5394 1
Entity #3 | Chains: H,I
H-2KBM3 MHC CLASS I MOLECULE HEAVY CHAIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26204
95 % 56 65 355 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 60 70 355
70 % 624 687 6
50 % 626 692 6
40 % 667 742 10
30 % 741 859 15
Entity #4 | Chains: L,M
MICROGLOBULIN MHC LIGHT CHAIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 114 133 94
95 % 172 215 64 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 172 215 68
70 % 768 878 4
50 % 783 900 3
40 % 783 900 8
30 % 783 900 14
Entity #5 | Chains: P,Q
DEV8 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.