Sequence Similarity Clusters for the Entities in PDB 1MWA

Entity #1 | Chains: A,C
2C T CELL RECEPTOR ALPHA CHAIN protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 11247
95 % 2 4 10867 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 2 4 10710
70 % 243 334 30
50 % 243 335 78
40 % 243 335 100
30 % 5139 7175 1
Entity #2 | Chains: B,D
2C T CELL RECEPTOR BETA CHAIN protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 11248
95 % 6 11 3203
90 % 12 21 1532
70 % 252 344 25
50 % 252 347 72
40 % 252 347 94
30 % 5140 7175 1
Entity #3 | Chains: H,I
H-2KBM3 MHC CLASS I MOLECULE HEAVY CHAIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 53 453
95 % 56 65 425 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 60 70 391
70 % 665 740 6
50 % 676 754 7
40 % 713 806 9
30 % 797 930 12
Entity #4 | Chains: L,M
MICROGLOBULIN MHC LIGHT CHAIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 150 189 81
95 % 187 234 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 187 234 66
70 % 818 944 4
50 % 833 966 3
40 % 833 966 6
30 % 833 966 9
Entity #5 | Chains: P,Q
DEV8 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures