Sequence Similarity Clusters for the Entities in PDB 1MWA

Entity #1 | Chains: A,C
2C T CELL RECEPTOR ALPHA CHAIN protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10695
95 % 2 4 10682 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 2 4 10536
70 % 16 25 1317
50 % 217 305 82
40 % 217 305 99
30 % 4075 5705 1
Entity #2 | Chains: B,D
2C T CELL RECEPTOR BETA CHAIN protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 10578
95 % 6 11 3173
90 % 12 21 1492
70 % 226 314 28
50 % 226 317 73
40 % 226 317 94
30 % 4076 5705 1
Entity #3 | Chains: H,I
H-2KBM3 MHC CLASS I MOLECULE HEAVY CHAIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27223
95 % 56 65 393 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 60 70 370
70 % 654 727 6
50 % 656 732 6
40 % 698 783 10
30 % 779 907 15
Entity #4 | Chains: L,M
MICROGLOBULIN MHC LIGHT CHAIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 114 135 96
95 % 183 228 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 183 228 67
70 % 801 922 4
50 % 816 944 3
40 % 816 944 7
30 % 816 944 12
Entity #5 | Chains: P,Q
DEV8 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures