Sequence Similarity Clusters for the Entities in PDB 1MW8

Entity #1 | Chains: Y
5'-D(*AP*CP*TP*TP*CP*GP*GP*GP*AP*TP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: X
DNA Topoisomerase I protein, length: 592 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 30042
95 % 4 12 5062 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 4 12 5083
70 % 4 12 5027
50 % 4 12 4805
40 % 4 12 4556
30 % 4 12 4162

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.