Sequence Similarity Clusters for the Entities in PDB 1MVU

Entity #1 | Chains: A
Ig kappa-chain VJ-region (Light chain) protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16148
95 % 1 3 15100 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 5 10765
70 % 36 191 73
50 % 58 308 22
40 % 186 936 5
30 % 209 1065 7
Entity #2 | Chains: B
Ig VDJ-region (HEAVY CHAIN) protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68448
95 % 1 3 15049 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 1 3 14783
70 % 13 85 265
50 % 121 583 7
40 % 187 936 5
30 % 210 1065 7
Entity #3 | Chains: P
P-GLYCOPROTEIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures