Sequence Similarity Clusters for the Entities in PDB 1MVU

Entity #1 | Chains: A
Ig kappa-chain VJ-region (Light chain) protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 15882
95 % 1 3 14887 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 5 10622
70 % 36 191 72
50 % 58 308 21
40 % 184 929 5
30 % 207 1056 7
Entity #2 | Chains: B
Ig VDJ-region (HEAVY CHAIN) protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67539
95 % 1 3 14837 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 1 3 14567
70 % 13 85 257
50 % 119 576 7
40 % 185 929 5
30 % 208 1056 7
Entity #3 | Chains: P
P-GLYCOPROTEIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.