Sequence Similarity Clusters for the Entities in PDB 1MVU

Entity #1 | Chains: A
Ig kappa-chain VJ-region (Light chain) protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30321
95 % 1 2 25120 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 4 15137
70 % 36 193 75
50 % 58 312 23
40 % 188 956 5
30 % 211 1085 7
Entity #2 | Chains: B
Ig VDJ-region (HEAVY CHAIN) protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 69697
95 % 1 2 24993 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 1 2 24150
70 % 13 86 268
50 % 123 599 6
40 % 189 956 5
30 % 212 1085 7
Entity #3 | Chains: P
P-GLYCOPROTEIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures