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An Information Portal to 105097 Biological Macromolecular Structures

Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome
Sequence Clustering and Redundancy Reduction Results
1MVR
Sequence Clusters for the Sequence Entities in PDB 1MVR
Entity #1: Chains: 1 - mRNA, triplet codon (A-site) rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: A - Helix 34 of 16S rRNA rna, length: 45 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: B - Helix 44 of 16S rRNA rna, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: C - Helix 69 of 23S rRNA rna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: D - Helix 89 of 23S rRNA rna, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #6: Chains: E - Helix 93 of 23S rRNA rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 158 35
95% 190 196 35
90% 190 196 37
70% 269 275 24
50% 269 275 33
40% 269 275 45
30% 269 275 68
Entity #8: Chains: L - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 19 1831
95% 13 21 2080
90% 13 21 2109
70% 15 23 1943
50% 144 152 124
40% 147 155 150
30% 149 157 176
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.