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An Information Portal to 111749 Biological Macromolecular Structures

Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome
Sequence Clustering and Redundancy Reduction Results
1MVR
Sequence Clusters for the Sequence Entities in PDB 1MVR
Entity #1: Chains: 1 - mRNA, triplet codon (A-site) rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: A - Helix 34 of 16S rRNA rna, length: 45 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: B - Helix 44 of 16S rRNA rna, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: C - Helix 69 of 23S rRNA rna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: D - Helix 89 of 23S rRNA rna, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #6: Chains: E - Helix 93 of 23S rRNA rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 182 46
95% 220 226 39
90% 220 226 43
70% 305 311 22
50% 306 312 30
40% 306 312 41
30% 306 312 57
Entity #8: Chains: L - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 19 1980
95% 13 21 2234
90% 13 21 2266
70% 16 24 1903
50% 157 165 146
40% 160 168 157
30% 163 171 174
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.