Sequence Similarity Clusters for the Entities in PDB 1MVR

Entity #1 | Chains: 1
mRNA, triplet codon (A-site) rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
Helix 34 of 16S rRNA rna, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: B
Helix 44 of 16S rRNA rna, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: C
Helix 69 of 23S rRNA rna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: D
Helix 89 of 23S rRNA rna, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: E
Helix 93 of 23S rRNA rna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 188 194 42
95 % 240 246 22
90 % 240 246 27
70 % 329 335 23
50 % 330 336 29
40 % 330 336 39
30 % 330 336 56
Entity #8 | Chains: L
50S ribosomal protein L11 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 2061
95 % 13 21 2326
90 % 13 21 2369
70 % 16 24 1993
50 % 171 179 152
40 % 174 182 161
30 % 177 185 178

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.