1MVR

Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome


Sequence Similarity Clusters for the Entities in PDB 1MVR

Entity #1 | Chains: 1
mRNA, triplet codon (A-site) rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
Helix 34 of 16S rRNA rna, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: B
Helix 44 of 16S rRNA rna, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: C
Helix 69 of 23S rRNA rna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: D
Helix 89 of 23S rRNA rna, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: E
Helix 93 of 23S rRNA rna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: O
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 213 219 54
95 % 277 283 39
90 % 277 283 44
70 % 429 435 20
50 % 442 448 25
40 % 442 448 38
30 % 442 448 58
Entity #8 | Chains: L
50S ribosomal protein L11 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 2637
95 % 13 21 2923
90 % 13 21 2961
70 % 16 24 2473
50 % 222 230 148
40 % 225 233 159
30 % 228 236 168

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures